4.5 Article

Comparative Genomics of Pathogenic and Nonpathogenic Beetle-Vectored Fungi in the Genus Geosmithia

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Ensembl Genomes 2016: more genomes, more complexity

Paul Julian Kersey et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors

Neil D. Rawlings et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Evolutionary Biology

OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes

Alison C. Testa et al.

GENOME BIOLOGY AND EVOLUTION (2016)

Article Multidisciplinary Sciences

Small genome of the fungus Escovopsis weberi, a specialized disease agent of ant agriculture

Tom J. B. de Man et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

A novel transcription factor gene FHS1 is involved in the DNA damage response in Fusarium graminearum

Hokyoung Son et al.

SCIENTIFIC REPORTS (2016)

Article Multidisciplinary Sciences

De novo genome assembly of Geosmithia morbida, the causal agent of thousand cankers disease

Taruna A. Schuelke et al.

Review Plant Sciences

Fungal Effectors and Plant Susceptibility

Libera Lo Presti et al.

ANNUAL REVIEW OF PLANT BIOLOGY, VOL 66 (2015)

Article Biochemical Research Methods

BFC: correcting Illumina sequencing errors

Heng Li

BIOINFORMATICS (2015)

Article Evolutionary Biology

Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea

Magnus Karlsson et al.

GENOME BIOLOGY AND EVOLUTION (2015)

Article Biochemistry & Molecular Biology

antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

Tilmann Weber et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Evolutionary Biology

Selecting optimal partitioning schemes for phylogenomic datasets

Robert Lanfear et al.

BMC EVOLUTIONARY BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Novel Information Theory-Based Measures for Quantifying Incongruence among Phylogenetic Trees

Leonidas Salichos et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

Comparative Genomics of the Pine Pathogens and Beetle Symbionts in the Genus Grosmannia

Sepideh Massoumi Alamouti et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Review Mycology

The evolving fungal genome

Eva H. Stukenbrock et al.

FUNGAL BIOLOGY REVIEWS (2014)

Article Biochemical Research Methods

QUAST: quality assessment tool for genome assemblies

Alexey Gurevich et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Selecting informative subsets of sparse supermatrices increases the chance to find correct trees

Bernhard Misof et al.

BMC BIOINFORMATICS (2013)

Article Biotechnology & Applied Microbiology

Sequencing and annotation of the Ophiostoma ulmi genome

Shima Khoshraftar et al.

BMC GENOMICS (2013)

Review Biotechnology & Applied Microbiology

Fungal laccase, manganese peroxidase and lignin peroxidase: Gene expression and regulation

Grzegorz Janusz et al.

ENZYME AND MICROBIAL TECHNOLOGY (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Review Biochemistry & Molecular Biology

The impact of transposable elements in environmental adaptation

Elena Casacuberta et al.

MOLECULAR ECOLOGY (2013)

Article Plant Sciences

Susceptibility of Walnut and Hickory Species to Geosmithia morbida

Curtis Utley et al.

PLANT DISEASE (2013)

Article Multidisciplinary Sciences

Comparative Genomics Reveals Insight into Virulence Strategies of Plant Pathogenic Oomycetes

Bishwo N. Adhikari et al.

PLOS ONE (2013)

Article Microbiology

Genome Update of Botrytis cinerea Strains B05.10 and T4

Martijn Staats et al.

EUKARYOTIC CELL (2012)

Article Evolutionary Biology

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist et al.

SYSTEMATIC BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris

Randy M. Berka et al.

NATURE BIOTECHNOLOGY (2011)

Letter Biochemical Research Methods

SignalP 4.0: discriminating signal peptides from transmembrane regions

Thomas Nordahl Petersen et al.

NATURE METHODS (2011)

Article Multidisciplinary Sciences

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

Vincent Ranwez et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen

Scott DiGuistini et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biotechnology & Applied Microbiology

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine

Peng Zheng et al.

GENOME BIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

Christian P. Kubicek et al.

GENOME BIOLOGY (2011)

Article Multidisciplinary Sciences

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Li-Jun Ma et al.

NATURE (2010)

Article Biochemical Research Methods

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

Salvador Capella-Gutierrez et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

Nicolas Lartillot et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Evolutionary Biology

A fungal phylogeny based on 82 complete genomes using the composition vector method

Hao Wang et al.

BMC EVOLUTIONARY BIOLOGY (2009)

Article Biochemistry & Molecular Biology

ABySS: A parallel assembler for short read sequence data

Jared T. Simpson et al.

GENOME RESEARCH (2009)

Article Multidisciplinary Sciences

A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat

Simon G. Krattinger et al.

SCIENCE (2009)

Review Microbiology

Secondary metabolism: regulation and role in fungal biology

Ellen M. Fox et al.

CURRENT OPINION IN MICROBIOLOGY (2008)

Article Biotechnology & Applied Microbiology

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

Diego Martinez et al.

NATURE BIOTECHNOLOGY (2008)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemical Research Methods

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genornes

Genis Parra et al.

BIOINFORMATICS (2007)

Article Evolutionary Biology

A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

David A. Fitzpatrick et al.

BMC EVOLUTIONARY BIOLOGY (2006)

Article Biochemistry & Molecular Biology

AUGUSTUS:: ab initio prediction of alternative transcripts

Mario Stanke et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Multidisciplinary Sciences

Autophagic fungal cell death is necessary for infection by the rice blast fungus

C Veneault-Fourrey et al.

SCIENCE (2006)

Review Microbiology

Fungal laccases - occurrence and properties

P Baldrian

FEMS MICROBIOLOGY REVIEWS (2006)

Review Biochemistry & Molecular Biology

Host-microbe interactions: Shaping the evolution of the plant immune response

ST Chisholm et al.

Article Biochemistry & Molecular Biology

PHI-base: a new database for pathogen host interactions

Rainer Winnenburg et al.

NUCLEIC ACIDS RESEARCH (2006)

Review Cell Biology

Common themes in the genome strategies of pathogens

JG Lawrence

CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)

Article Biochemistry & Molecular Biology

Frp1 is a Fusarium oxysporum F-box protein required for pathogenicity on tomato

RGE Duyvesteijn et al.

MOLECULAR MICROBIOLOGY (2005)

Review Biochemistry & Molecular Biology

Cullin-based ubiquitin ligases: Cul3-BTB complexes join the family

L Pintard et al.

EMBO JOURNAL (2004)

Article Biochemical Research Methods

PyEvolve: a toolkit for statistical modelling of molecular evolution

A Butterfield et al.

BMC BIOINFORMATICS (2004)

Review Cell Biology

The SCF ubiquitin ligase: Insights into a molecular machine

T Cardozo et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2004)

Article Multidisciplinary Sciences

The genome sequence of the filamentous fungus Neurospora crassa

JE Galagan et al.

NATURE (2003)

Article Genetics & Heredity

Analysis of expressed sequence tags from Gibberella zeae (anamorph Fusarium graminearum)

F Trail et al.

FUNGAL GENETICS AND BIOLOGY (2003)

Article Biochemistry & Molecular Biology

Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes

A Krogh et al.

JOURNAL OF MOLECULAR BIOLOGY (2001)