相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Can enzyme proximity accelerate cascade reactions?
Andrij Kuzmak et al.
SCIENTIFIC REPORTS (2019)
Crowding-Induced Elongated Conformation of Urea-Unfolded Apoazurin: Investigating the Role of Crowder Shape in Silico
Fabio C. Zegarra et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2019)
Evaluating Models of Varying Complexity of Crowded Intrinsically Disordered Protein Solutions Against SAXS
Eric Fagerberg et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2019)
Interaction between β-Lactoglobuline and Weak Polyelectrolyte Chains: A Study Using Monte Carlo Simulation
Paola B. Torres et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2019)
Effect of Charge Regulation and Conformational Equilibria in the Stretching Properties of Weak Polyelectrolytes
Pablo M. Blanco et al.
MACROMOLECULES (2019)
Role of Charge Regulation and Fluctuations in the Conformational and Mechanical Properties of Weak Flexible Polyelectrolytes
Pablo M. Blanco et al.
POLYMERS (2019)
Simulations of ionization equilibria in weak polyelectrolyte solutions and gels
Jonas Landsgesell et al.
SOFT MATTER (2019)
Intrinsically Disordered Protein Exhibits Both Compaction and Expansion under Macromolecular Crowding
Anthony Banks et al.
BIOPHYSICAL JOURNAL (2018)
Utilizing Coarse-Grained Modeling and Monte Carlo Simulations to Evaluate the Conformational Ensemble of Intrinsically Disordered Proteins and Regions
Carolina Cragnell et al.
JOURNAL OF MOLECULAR BIOLOGY (2018)
Macromolecular diffusion in crowded media beyond the hard-sphere model
Pablo M. Blanco et al.
SOFT MATTER (2018)
Sequence determinants of protein phase behavior from a coarse-grained model
Gregory L. Dignon et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Intrinsically disordered proteins in crowded milieu: when chaos prevails within the cellular gumbo
Alexander V. Fonin et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2018)
Coupling of Charge Regulation and Conformational Equilibria in Linear Weak Polyelectrolytes: Treatment of Long-Range Interactions via Effective Short-Ranged and pH-Dependent Interaction Parameters
Pablo M. Blanco et al.
POLYMERS (2018)
pH-Dependent Polyelectrolyte Bridging of Charged Nanoparticles
Morten Stornes et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2018)
Dealing with long-range interactions in the determination of polyelectrolyte ionization properties. Extension of the transfer matrix formalism to the full range of ionic strengths
Josep L. Garces et al.
JOURNAL OF POLYMER SCIENCE PART B-POLYMER PHYSICS (2017)
Interaction of Charged Patchy Protein Models with Like-Charged Polyelectrolyte Brushes
Cemil Yigit et al.
LANGMUIR (2017)
Brownian Dynamics Computational Model of Protein Diffusion in Crowded Media with Dextran Macromolecules as Obstacles
Pablo M. Blanco et al.
ENTROPY (2017)
Adsorption of polyelectrolyte-like proteins to silica surfaces and the impact of pH on the response to ionic strength. A Monte Carlo simulation and ellipsometry study
Kristin Hyltegren et al.
JOURNAL OF COLLOID AND INTERFACE SCIENCE (2017)
Crowding in Cellular Environments at an Atomistic Level from Computer Simulations
Michael Feig et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2017)
On the origin of non-membrane-bound organelles, and their physiological function
Wylie Stroberg et al.
JOURNAL OF THEORETICAL BIOLOGY (2017)
50th Anniversary Perspective: A Perspective on Polyelectrolyte Solutions
M. Muthukumar
MACROMOLECULES (2017)
Monte Carlo Simulations of Complexation between Weak Polyelectrolytes and a Charged Nanoparticle. Influence of Polyelectrolyte Chain Length and Concentration
Morten Stornes et al.
MACROMOLECULES (2017)
Protonation of β-lactoglobulin in the presence of strong polyelectrolyte chains: a study using Monte Carlo simulation
Paola Torres et al.
COLLOIDS AND SURFACES B-BIOINTERFACES (2017)
Amyloid beta: structure, biology and structure-based therapeutic development
Guo-fang Chen et al.
ACTA PHARMACOLOGICA SINICA (2017)
Adsorption of the intrinsically disordered saliva protein histatin 5 to silica surfaces. A Monte Carlo simulation and ellipsometry study
Kristin Hyltegren et al.
JOURNAL OF COLLOID AND INTERFACE SCIENCE (2016)
Counterion condensation on polyelectrolyte chains adsorbed on charged surfaces
C. F. Narambuena et al.
COLLOIDS AND SURFACES A-PHYSICOCHEMICAL AND ENGINEERING ASPECTS (2015)
Relating sequence encoded information to form and function of intrinsically disordered proteins
Rahul K. Das et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2015)
Like-charged protein-polyelectrolyte complexation driven by charge patches
Cemil Yigit et al.
JOURNAL OF CHEMICAL PHYSICS (2015)
MOLSIM: A modular molecular simulation software
Jurij Rescic et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2015)
Synergistic role of DNA-binding protein and macromolecular crowding on DNA condensation. An experimental and theoretical approach
Sravani Keerthi Ramisetty et al.
JOURNAL OF MOLECULAR LIQUIDS (2015)
Polymer physics of intracellular phase transitions
Clifford P. Brangwynne et al.
NATURE PHYSICS (2015)
Effects of Macromolecular Crowding on the Collapse of Biopolymers
Hongsuk Kang et al.
PHYSICAL REVIEW LETTERS (2015)
The effect of composition on diffusion of macromolecules in a crowded environment
Svyatoslav Kondrat et al.
PHYSICAL BIOLOGY (2015)
Effect of crowding by Dextrans in enzymatic reactions
Isabel Pastor et al.
BIOPHYSICAL CHEMISTRY (2014)
How Does It Kill?: Understanding the Candidacidal Mechanism of Salivary Histatin 5
Sumant Puri et al.
EUKARYOTIC CELL (2014)
Tuning the smooth particle mesh Ewald sum: Application on ionic solutions and dipolar fluids
Bjorn Linse et al.
JOURNAL OF CHEMICAL PHYSICS (2014)
Structural behavior and dynamics of an anomalous fluid between attractive and repulsive walls: Templating, molding, and superdiffusion
Fabio Leoni et al.
JOURNAL OF CHEMICAL PHYSICS (2014)
Macromolecular Crowding Effect upon in Vitro Enzyme Kinetics: Mixed Activation-Diffusion Control of the Oxidation of NADH by Pyruvate Catalyzed by Lactate Dehydrogenase
Cristina Balcells et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2014)
Coupling of conformational and ionization equilibria in linear poly(ethylenimine): a study based on the site binding/rotational isomeric state (SBRIS) model
J. L. Garces et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2014)
Role of histidine for charge regulation of unstructured peptides at interfaces and in bulk
Anil Kurut et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2014)
The Shape of Protein Crowders is a Major Determinant of Protein Diffusion
Jessica Balbo et al.
BIOPHYSICAL JOURNAL (2013)
Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues
Rahul K. Das et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Charge regulation in biomolecular solution
Mikael Lund et al.
QUARTERLY REVIEWS OF BIOPHYSICS (2013)
Enhanced Condensation and Facilitated Release of DNA Using Mixed Cationic Agents: A Combined Experimental and Monte Carlo Study
Andreia F. Jorge et al.
BIOMACROMOLECULES (2012)
Atomic Detail Brownian Dynamics Simulations of Concentrated Protein Solutions with a Mean Field Treatment of Hydrodynamic Interactions
Paolo Mereghetti et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
Effects of Molecular Crowding on the Dynamics of Intrinsically Disordered Proteins
Elio A. Cino et al.
PLOS ONE (2012)
Intrinsically disordered proteins may escape unwanted interactions via functional misfolding
Vladimir N. Uversky
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2011)
Protein Purification by Polyelectrolyte Coacervation: Influence of Protein Charge Anisotropy on Selectivity
Yisheng Xu et al.
BIOMACROMOLECULES (2011)
A semi-grand canonical Monte Carlo simulation model for ion binding to ionizable surfaces: Proton binding of carboxylated latex particles as a case study
Sergio Madurga et al.
JOURNAL OF CHEMICAL PHYSICS (2011)
Understanding protein non-folding
Vladimir N. Uversky et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2010)
The Mysterious Unfoldome: Structureless, Underappreciated, Yet Vital Part of Any Given Proteome
Vladimir N. Uversky
JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY (2010)
Softness dependence of the anomalies for the continuous shouldered well potential
Pol Vilaseca et al.
JOURNAL OF CHEMICAL PHYSICS (2010)
New International Formulation for the Viscosity of H2O
M. L. Huber et al.
JOURNAL OF PHYSICAL AND CHEMICAL REFERENCE DATA (2009)
A Monte Carlo study of weak polyampholytes: Stiffness and primary structure influences on titration curves and chain conformations
Serge Ulrich et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2007)
Effect of the surface charge discretization on electric double layers:: A Monte Carlo simulation study
Sergio Madurga et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Ionization equilibria and conformational transitions in polyprotic molecules and polyelectrolytes
Jose L. Garces et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2006)
Anomalous diffusion of proteins due to molecular crowding
DS Banks et al.
BIOPHYSICAL JOURNAL (2005)
Local conformational fluctuations can modulate the coupling between proton binding and global structural transitions in proteins
ST Whitten et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Adsorption of a weakly charged polymer on an oppositely charged colloidal particle: Monte Carlo simulations investigation
A Laguecir et al.
POLYMER (2005)
Statics and dynamics of strongly charged soft matter
H Boroudjerdi et al.
PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS (2005)
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
JJ Ward et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome
YF Shen et al.
ANALYTICAL CHEMISTRY (2004)
Constant pH molecular dynamics in generalized born implicit solvent
J Mongan et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Fungicidal effect of three new synthetic cationic peptides against Candida albicans
H Nikawa et al.
ORAL DISEASES (2004)
Protein-polyelectrolyte cluster formation and redissolution: A Monte Carlo study
F Carlsson et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2003)
Alternate aggregation pathways of the Alzheimer β-amyloid peptide:: Aβ association kinetics at endosomal pH
PM Gorman et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
First-order conformational transition of annealed polyelectrolytes in a poor solvent
S Uyaver et al.
EUROPHYSICS LETTERS (2003)
beta-amyloid protein oligomers induced by metal ions and acid pH are distinct from those generated by slow spontaneous ageing at neutral pH
GMJA Klug et al.
EUROPEAN JOURNAL OF BIOCHEMISTRY (2003)
Constant-pH molecular dynamics using stochastic titration
AM Baptista et al.
JOURNAL OF CHEMICAL PHYSICS (2002)
Macromolecular crowding: obvious but underappreciated
RJ Ellis
TRENDS IN BIOCHEMICAL SCIENCES (2001)
The molecular interaction of human salivary histatins with polyphenolic compounds
K Wróblewski et al.
EUROPEAN JOURNAL OF BIOCHEMISTRY (2001)
Characterization of histatin 5 with respect to amphipathicity, hydrophobicity, and effects on cell and mitochondrial membrane integrity excludes a candidacidal mechanism of pore formation
EJ Helmerhorst et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)