4.1 Article

A Conceptual Model for Geo-Online Exploratory Data Visualization: The Case of the COVID-19 Pandemic

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biochemical Research Methods

The road towards data integration in human genomics: players, steps and interactions

Anna Bernasconi et al.

Summary: With thousands of new experimental datasets being generated daily within large cooperative efforts, data integration becomes crucial but faces challenges due to heterogeneity. This paper outlines a technological pipeline for data production to integration, introduces a taxonomy of genomic data players, and focuses on addressing issues in genomic data integration.

BRIEFINGS IN BIOINFORMATICS (2021)

Article Public, Environmental & Occupational Health

The need for GIScience in mapping COVID-19

Leah Rosenkrantz et al.

Summary: Since the late 2019 tracking of COVID-19 in China, the virus has shaped global morbidity and mortality patterns, revealing strengths and limitations in health care systems and social safety nets. Real-time mapping tools have strengthened reporting of its impact, but often over-emphasize their usefulness for tracking disease progression and responses, experiencing challenges from messy health data and lack of high-resolution spatial data. Adopting GIScience approaches can address these shortcomings and provide a more accurate view of COVID-19's long-term global health impact.

HEALTH & PLACE (2021)

Article Biochemistry & Molecular Biology

Modeling COVID-19 scenarios for the United States

Robert C. Reiner et al.

Summary: This study uses data from the first 8 months of the COVID-19 pandemic in the United States to explore potential future scenarios of social distancing mandates and mask use at the state level, projecting the epidemic's course through winter 2021.

NATURE MEDICINE (2021)

Article Biochemistry & Molecular Biology

ViruSurf: an integrated database to investigate viral sequences

Arif Canakoglu et al.

Summary: ViruSurf is a large public database containing viral sequences and curated metadata from various sources, offering complex search functionalities. It includes harmful virus species to humans and enables faster responses to potential threats from new viruses in the future.

NUCLEIC ACIDS RESEARCH (2021)

Article Biochemistry & Molecular Biology

GESS: a database of global evaluation of SARS-CoV-2/hCoV-19 sequences

Shuyi Fang et al.

Summary: GESS is a resource based on comprehensive analysis of high-quality SARS-CoV-2 genomes, revealing geographical distributions and evolution patterns of SNVs, providing directive information for public health policies and vaccine designs.

NUCLEIC ACIDS RESEARCH (2021)

Review Biochemical Research Methods

How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles

Xu Zuo et al.

Summary: This study reviewed COVID-19 datasets extracted from PubMed Central articles, finding that 28.5% of articles provided dataset links, with epidemiological datasets being the most common. Most datasets were immediately downloadable, with GitHub being the most popular hosting repository and CSV, XLSX, and JSON being the most popular data formats. Citation patterns for COVID-19 datasets varied depending on the specific dataset.

BRIEFINGS IN BIOINFORMATICS (2021)

Review Biochemical Research Methods

A review on viral data sources and search systems for perspective mitigation of COVID-19

Anna Bernasconi et al.

Summary: With the outbreak of COVID-19, the research community is making unprecedented efforts to understand and mitigate the impact of the pandemic. Organizations are focusing on COVID-19 virus data and services, while new organizations and resources are emerging to lay the groundwork for future pandemic studies.

BRIEFINGS IN BIOINFORMATICS (2021)

Letter Infectious Diseases

An interactive web-based dashboard to track COVID-19 in real time

Ensheng Dong et al.

LANCET INFECTIOUS DISEASES (2020)

Letter Infectious Diseases

Open access epidemiological data from the COVID-19 outbreak

Bo Xu et al.

LANCET INFECTIOUS DISEASES (2020)

Article Medicine, General & Internal

Locally Informed Simulation to Predict Hospital Capacity Needs During the COVID-19 Pandemic

Gary E. Weissman et al.

ANNALS OF INTERNAL MEDICINE (2020)

Article Computer Science, Information Systems

An interactive online dashboard for tracking COVID-19 in US counties, cities, and states in real time

Benjamin D. Wissel et al.

JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION (2020)

Article Environmental Sciences

A Preliminary Evaluation of the Public Risk Perception Related to the COVID-19 Health Emergency in Italy

Giulia Motta Zanin et al.

INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH (2020)

Article Medicine, General & Internal

Tracking COVID-19 responsibly

Rania Muhareb et al.

LANCET (2020)

Article Multidisciplinary Sciences

Epidemiological data from the COVID-19 outbreak, real-time case information

Bo Xu et al.

SCIENTIFIC DATA (2020)

Editorial Material Public, Environmental & Occupational Health

Digital public health and COVID-19

Christopher J. L. Murray et al.

LANCET PUBLIC HEALTH (2020)

Article Multidisciplinary Sciences

Economic and social consequences of human mobility restrictions under COVID-19

Giovanni Bonaccorsi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Computer Science, Information Systems

Rapid development of visualization dashboards to enhance situation awareness of COVID-19 telehealth initiatives at a multihospital healthcare system

Ram A. Dixit et al.

JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION (2020)

Review Environmental Sciences

Big Data Analytics in the Fight against Major Public Health Incidents (Including COVID-19): A Conceptual Framework

Qiong Jia et al.

INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH (2020)

Article Biochemical Research Methods

Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization

Zhengqiao Zhao et al.

PLOS COMPUTATIONAL BIOLOGY (2020)

Article Psychology, Biological

Real-time, interactive website for US-county-level COVID-19 event risk assessment

Aroon Chande et al.

NATURE HUMAN BEHAVIOUR (2020)

Article Green & Sustainable Science & Technology

COVID-19: Challenges to GIS with Big Data

Chenghu Zhou et al.

GEOGRAPHY AND SUSTAINABILITY (2020)

Review Biology

Outbreak analytics: a developing data science for informing the response to emerging pathogens

Jonathan A. Polonsky et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)

Review Public, Environmental & Occupational Health

Advances in Visualization Tools for Phylogenomic and Phylodynamic Studies of Viral Diseases

Kristof Theys et al.

FRONTIERS IN PUBLIC HEALTH (2019)

Article Biochemical Research Methods

Nextstrain: real-time tracking of pathogen evolution

James Hadfield et al.

BIOINFORMATICS (2018)

Article Biochemistry & Molecular Biology

Virus Variation Resource - improved response to emergent viral outbreaks

Eneida L. Hatcher et al.

NUCLEIC ACIDS RESEARCH (2017)

Editorial Material Medicine, General & Internal

Toward a Shared Vision for Cancer Genomic Data

Robert L. Grossman et al.

NEW ENGLAND JOURNAL OF MEDICINE (2016)

Article Genetics & Heredity

Microreact: visualizing and sharing data for genomic epidemiology and phylogeography

Silvia Argimon et al.

MICROBIAL GENOMICS (2016)

Article Biochemical Research Methods

nextflu: real-time tracking of seasonal influenza virus evolution in humans

Richard A. Neher et al.

BIOINFORMATICS (2015)

Article Computer Science, Software Engineering

What Makes a Visualization Memorable?

Michelle A. Borkin et al.

IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS (2013)

Article Mathematical & Computational Biology

OpenFluDB, a database for human and animal influenza virus

Robin Liechti et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2010)

Article Public, Environmental & Occupational Health

Online GIS services for mapping and sharing disease information

Sheng Gao et al.

INTERNATIONAL JOURNAL OF HEALTH GEOGRAPHICS (2008)