4.5 Article

Genetic variation and microRNA targeting of A-to-I RNA editing fine tune human tissue transcriptomes

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Genetics & Heredity

Detecting Allele-Specific Alternative Splicing from Population-Scale RNA-Seq Data

Levon Demirdjian et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2020)

Letter Genetics & Heredity

Abundant associations with gene expression complicate GWAS follow-up

Boxiang Liu et al.

NATURE GENETICS (2019)

Article Biochemistry & Molecular Biology

RNA editing alterations in a multi-ethnic Alzheimer disease cohort converge on immune and endocytic molecular pathways

Olivia K. Gardner et al.

HUMAN MOLECULAR GENETICS (2019)

Article Neurosciences

Widespread RNA editing dysregulation in brains from autistic individuals

Stephen S. Tran et al.

NATURE NEUROSCIENCE (2019)

Article Biochemistry & Molecular Biology

Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human

Guangyi Niu et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019

Annalisa Buniello et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

The landscape of miRNA editing in animals and its impact on miRNA biogenesis and targeting

Lishi Li et al.

GENOME RESEARCH (2018)

Article Biochemical Research Methods

A Bayesian framework for multiple trait colocalization from summary association statistics

Claudia Giambartolomei et al.

BIOINFORMATICS (2018)

Review Biochemistry & Molecular Biology

All I's on the RADAR: role of ADAR in gene regulation

Galina Shevchenko et al.

FEBS LETTERS (2018)

Article Genetics & Heredity

A large electronic-health-record-based genome-wide study of serum lipids

Thomas J. Hoffmann et al.

NATURE GENETICS (2018)

Article Biochemistry & Molecular Biology

Systematic characterization of A-to-I RNA editing hotspots in microRNAs across human cancers

Yumeng Wang et al.

GENOME RESEARCH (2017)

Article Biochemistry & Molecular Biology

A-to-I RNA Editing Up-regulates Human Dihydrofolate Reductase in Breast Cancer

Masataka Nakano et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2017)

Article Multidisciplinary Sciences

Dynamic landscape and regulation of RNA editing in mammals

Meng How Tan et al.

NATURE (2017)

Article Multidisciplinary Sciences

Genetic effects on gene expression across human tissues

Francois Aguet et al.

NATURE (2017)

Article Biotechnology & Applied Microbiology

An integrated expression atlas of miRNAs and their promoters in human and mouse

Derek de Rie et al.

NATURE BIOTECHNOLOGY (2017)

Article Multidisciplinary Sciences

Transancestral mapping and genetic load in systemic lupus erythematosus

Carl D. Langefeld et al.

NATURE COMMUNICATIONS (2017)

Article Ecology

Dietary adaptation of FADS genes in Europe varied across time and geography

Kaixiong Ye et al.

NATURE ECOLOGY & EVOLUTION (2017)

Article Biotechnology & Applied Microbiology

Population and allelic variation of A-to-I RNA editing in human transcriptomes

Eddie Park et al.

GENOME BIOLOGY (2017)

Article Biochemical Research Methods

rMATS- DVR: rMATS discovery of differential variants in RNA

Jinkai Wang et al.

BIOINFORMATICS (2017)

Review Genetics & Heredity

10 Years of GWAS Discovery: Biology, Function, and Translation

Peter M. Visscher et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2017)

Review Immunology

Mechanisms and consequences of Jak-STAT signaling in the immune system

Alejandro V. Villarino et al.

NATURE IMMUNOLOGY (2017)

Article Biochemistry & Molecular Biology

Expression Atlas update-an integrated database of gene and protein expression in humans, animals and plants

Robert Petryszak et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease

William J. Astle et al.

Review Biochemistry & Molecular Biology

The role of glutathione reductase and related enzymes on cellular redox homoeostasis network

Narciso Couto et al.

FREE RADICAL BIOLOGY AND MEDICINE (2016)

Article Multidisciplinary Sciences

A global reference for human genetic variation

David M. Altshuler et al.

NATURE (2015)

Review Genetics & Heredity

The role of regulatory variation in complex traits and disease

Frank W. Albert et al.

NATURE REVIEWS GENETICS (2015)

Article Multidisciplinary Sciences

Genetic mapping uncovers cis-regulatory landscape of RNA editing

Gokul Ramaswami et al.

NATURE COMMUNICATIONS (2015)

Article Multidisciplinary Sciences

Profiling RNA editing in human tissues: towards the inosinome Atlas

Ernesto Picardi et al.

SCIENTIFIC REPORTS (2015)

Article Biochemistry & Molecular Biology

A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes

Lily Bazak et al.

GENOME RESEARCH (2014)

Article Biochemistry & Molecular Biology

RADAR: a rigorously annotated database of A-to-I RNA editing

Gokul Ramaswami et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biology

MicroRNA-mediated repression of nonsense mRNAs

Ya Zhao et al.

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biotechnology & Applied Microbiology

GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data

Keyan Zhao et al.

GENOME BIOLOGY (2013)

Article Biochemistry & Molecular Biology

RNA editing in the human ENCODE RNA-seq data

Eddie Park et al.

GENOME RESEARCH (2012)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

miR-301a as an NF-κB activator in pancreatic cancer cells

Zhongxin Lu et al.

EMBO JOURNAL (2011)

Article Biochemistry & Molecular Biology

The Sequence Read Archive

Rasko Leinonen et al.

NUCLEIC ACIDS RESEARCH (2011)

Review Biochemistry & Molecular Biology

Functions and Regulation of RNA Editing by ADAR Deaminases

Kazuko Nishikura

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)

Review Biochemistry & Molecular Biology

Regulation of mRNA Translation and Stability by microRNAs

Marc Robert Fabian et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)

Article Multidisciplinary Sciences

Understanding mechanisms underlying human gene expression variation with RNA sequencing

Joseph K. Pickrell et al.

NATURE (2010)

Article Multidisciplinary Sciences

RNA editing changes the lesion specificity for the DNA repair enzyme NEIL1

Jongchan Yeo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

Characterization of microRNA expression profiles in normal human tissues

Yu Liang et al.

BMC GENOMICS (2007)

Article Biochemistry & Molecular Biology

Hypothesis: RNA editing of microRNA target sites in humans?

Han Liang et al.

Article Biochemical Research Methods

Haploview: analysis and visualization of LD and haplotype maps

JC Barrett et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

Liver disintegration in the mouse embryo caused by deficiency in the RNA-editing enzyme ADAR1

JC Hartner et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Biotechnology & Applied Microbiology

Systematic identification of abundant A-to-I editing sites in the human transcriptome

EY Levanon et al.

NATURE BIOTECHNOLOGY (2004)

Review Nutrition & Dietetics

Structure, function, and dietary regulation of Delta 6, Delta 5, and Delta 9 desaturases

MT Nakamura et al.

ANNUAL REVIEW OF NUTRITION (2004)

Article Biochemistry & Molecular Biology

The human genome browser at UCSC

WJ Kent et al.

GENOME RESEARCH (2002)

Article Biochemistry & Molecular Biology

dbSNP: the NCBI database of genetic variation

ST Sherry et al.

NUCLEIC ACIDS RESEARCH (2001)