4.5 Article

Promoter G-quadruplex folding precedes transcription and is controlled by chromatin

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

G-quadruplexes originating from evolutionary conserved L1 elements interfere with neuronal gene expression in Alzheimer's disease

Roy Hanna et al.

Summary: G-quadruplexes present at specific loci in Alzheimer's disease neurons are associated with reduced gene expression and perturbed alternative splicing.

NATURE COMMUNICATIONS (2021)

Article Biotechnology & Applied Microbiology

Promoter G-quadruplex folding precedes transcription and is controlled by chromatin

Jiazhen Shen et al.

Summary: The folding of G4s is linked to the establishment of accessible chromatin and does not require active transcription.

GENOME BIOLOGY (2021)

Article Multidisciplinary Sciences

Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome

Shrabasti Roychoudhury et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Review Cell Biology

The regulation and functions of DNA and RNA G-quadruplexes

Dhaval Varshney et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2020)

Article Chemistry, Multidisciplinary

Single-molecule visualization of DNA G-quadruplex formation in live cells

Marco Di Antonio et al.

NATURE CHEMISTRY (2020)

Article Genetics & Heredity

Landscape of G-quadruplex DNA structural regions in breast cancer

Robert Haensel-Hertsch et al.

NATURE GENETICS (2020)

Article Biochemistry & Molecular Biology

Whole genome experimental maps of DNA G-quadruplexes in multiple species

Giovanni Marsico et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Multidisciplinary Sciences

Hypoxia induces rapid changes to histone methylation and reprograms chromatin

Michael Batie et al.

SCIENCE (2019)

Article Biochemistry & Molecular Biology

Integrative characterization of G-Quadruplexes in the three-dimensional chromatin structure

Yue Hou et al.

EPIGENETICS (2019)

Article Biochemistry & Molecular Biology

Identification of LARK as a novel and conserved G-quadruplex binding protein in invertebrates and vertebrates

Kangkang Niu et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

CNBP controls transcription by unfolding DNA G-quadruplex structures

Aldana P. David et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biotechnology & Applied Microbiology

Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling

Aslihan Karabacak Calviello et al.

GENOME BIOLOGY (2019)

Article Multidisciplinary Sciences

Global profiling of protein-DNA and protein-nucleosome binding affinities using quantitative mass spectrometry

Matthew M. Makowski et al.

NATURE COMMUNICATIONS (2018)

Article Genetics & Heredity

G-quadruplex structures mark human regulatory chromatin

Robert Hansel-Hertsch et al.

NATURE GENETICS (2016)

Article Multidisciplinary Sciences

Acetate functions as an epigenetic metabolite to promote lipid synthesis under hypoxia

Xue Gao et al.

NATURE COMMUNICATIONS (2016)

Article Biotechnology & Applied Microbiology

High-throughput sequencing of DNA G-quadruplex structures in the human genome

Vicki S. Chambers et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemistry & Molecular Biology

CDK9 inhibitors define elongation checkpoints at both ends of RNA polymerase II-transcribed genes

Clelia Laitem et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Article Multidisciplinary Sciences

SINE transcription by RNA polymerase III is suppressed by histone methylation but not by DNA methylation

Dhaval Varshney et al.

NATURE COMMUNICATIONS (2015)

Article Biochemistry & Molecular Biology

CDK9 inhibitors define elongation checkpoints at both ends of RNA polymerase II-transcribed genes

Clelia Laitem et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Article Biotechnology & Applied Microbiology

A transient ischemic environment induces reversible compaction of chromatin

Ina Kirmes et al.

GENOME BIOLOGY (2015)

Article Biochemical Research Methods

Quantitative Profiling of Chromatome Dynamics Reveals a Novel Role for HP1BP3 in Hypoxia-induced Oncogenesis

Bamaprasad Dutta et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Article Biochemistry & Molecular Biology

G quadruplexes are genomewide targets of transcriptional helicases XPB and XPD

Lucas T. Gray et al.

NATURE CHEMICAL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

deepTools: a flexible platform for exploring deep-sequencing data

Fidel Ramirez et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Chemistry, Multidisciplinary

Quantitative visualization of DNA G-quadruplex structures in human cells

Giulia Biffi et al.

NATURE CHEMISTRY (2013)

Review Genetics & Heredity

The G4 Genome

Nancy Maizels et al.

PLOS GENETICS (2013)

Review Biochemistry & Molecular Biology

Hypoxia-Inducible Factors in Physiology and Medicine

Gregg L. Semenza

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Multidisciplinary Sciences

Architecture of the human regulatory network derived from ENCODE data

Mark B. Gerstein et al.

NATURE (2012)

Article Biochemical Research Methods

Icy: an open bioimage informatics platform for extended reproducible research

Fabrice de Chaumont et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro

Eun-Ang Raiber et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

XPB, a subunit of TFIIH, is a target of the natural product triptolide

Denis V. Titov et al.

NATURE CHEMICAL BIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

Shankar Balasubramanian et al.

NATURE REVIEWS DRUG DISCOVERY (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Halogen Bonds Form the Basis for Selective P-TEFb Inhibition by DRB

Sonja Baumli et al.

CHEMISTRY & BIOLOGY (2010)

Article Chemistry, Multidisciplinary

Small-molecule-mediated G-quadruplex isolation from human cells

Sebastian Mueller et al.

NATURE CHEMISTRY (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Review Oncology

Hypoxia, DNA repair and genetic instability

Robert G. Bristow et al.

NATURE REVIEWS CANCER (2008)

Article Biochemistry & Molecular Biology

G-quadruplexes in promoters throughout the human genome

Julian L. Huppert et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

The dynamic response of upstream DNA to transcription-generated torsional stress

F Kouzine et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)