4.5 Review

How to untie G-quadruplex knots and why?

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Chemistry, Multidisciplinary

Enhanced sampling molecular dynamics simulations correctly predict the diverse activities of a series of stiff-stilbene G-quadruplex DNA ligands

Michael P. O'Hagan et al.

Summary: Ligands with the capability to bind specifically to G-quadruplexes (G4s) and control their structure offer potential in developing novel therapies, technologies, and materials. Predictive tools are needed to drive ligand design, while molecular dynamics simulations provide insights into ligand binding mechanisms and perturbation of G4 structures. Experimental validation shows good agreement with simulated results, indicating the potential of metadynamics simulations in aiding the development of molecules influencing G4 structure.

CHEMICAL SCIENCE (2021)

Article Chemistry, Multidisciplinary

Stiff-Stilbene Ligands Target G-Quadruplex DNA and Exhibit Selective Anticancer and Antiparasitic Activity

Michael P. O'Hagan et al.

CHEMISTRY-A EUROPEAN JOURNAL (2020)

Review Genetics & Heredity

History of DNA Helicases

Robert M. Brosh et al.

Review Genetics & Heredity

Yeast Genome Maintenance by the Multifunctional PIF1 DNA Helicase Family

Julius Muellner et al.

Review Cell Biology

The regulation and functions of DNA and RNA G-quadruplexes

Dhaval Varshney et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2020)

Article Biochemistry & Molecular Biology

RTEL1 suppresses G-quadruplex-associated R-loops at difficult-to-replicate loci in the human genome

Wei Wu et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2020)

Article Biochemistry & Molecular Biology

Human POT1 unfolds G-quadruplexes by conformational selection

Jonathan B. Chaires et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Biochemistry & Molecular Biology

A Genetic Map of the Response to DNA Damage in Human Cells

Michele Olivieri et al.

Article Genetics & Heredity

Landscape of G-quadruplex DNA structural regions in breast cancer

Robert Haensel-Hertsch et al.

NATURE GENETICS (2020)

Article Biochemistry & Molecular Biology

Detection of genomic G-quadruplexes in living cells using a small artificial protein

Ke-Wei Zheng et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Biochemistry & Molecular Biology

Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back

Prakash Kharel et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Chemistry, Multidisciplinary

Visible-light photoswitching of ligand binding mode suggests G-quadruplex DNA as a target for photopharmacology

Michael P. O'Hagan et al.

CHEMICAL COMMUNICATIONS (2020)

Article Chemistry, Multidisciplinary

Chemical-biology approaches to probe DNA and RNA G-quadruplex structures in the genome

Federica Raguseo et al.

CHEMICAL COMMUNICATIONS (2020)

Review Chemistry, Multidisciplinary

The Structure and Function of DNA G-Quadruplexes

Jochen Spiegel et al.

TRENDS IN CHEMISTRY (2020)

Article Biochemistry & Molecular Biology

Whole genome experimental maps of DNA G-quadruplexes in multiple species

Giovanni Marsico et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Genetics & Heredity

Replication of G Quadruplex DNA

Leticia Koch Lerner et al.

Article Multidisciplinary Sciences

RNA G-quadruplex is resolved by repetitive and ATP-dependent mechanism of DHX36

Ramreddy Tippana et al.

NATURE COMMUNICATIONS (2019)

Review Chemistry, Organic

Binding and Beyond: What Else Can G-Quadruplex Ligands Do?

Michael P. O'Hagan et al.

EUROPEAN JOURNAL OF ORGANIC CHEMISTRY (2019)

Review Biochemistry & Molecular Biology

G-Quadruplex-Based Fluorescent Turn-On Ligands and Aptamers: From Development to Applications

Mubarak I. Umar et al.

MOLECULES (2019)

Review Cell Biology

The roles of structural dynamics in the cellular functions of RNAs

Laura R. Ganser et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2019)

Article Biology

Genetic interactions of G-quadruplexes in humans

Katherine G. Zyner et al.

Article Biochemistry & Molecular Biology

Studying the Potassium-Induced G-Quadruplex DNA Folding Process Using Microscale Thermophoresis

Ming-Li Zhang et al.

BIOCHEMISTRY (2019)

Review Biochemistry & Molecular Biology

The Interplay between G-quadruplex and Transcription

Nayun Kim

CURRENT MEDICINAL CHEMISTRY (2019)

Review Biochemistry & Molecular Biology

Mechanisms of DNA Replication and Repair: Insights from the Study of G-Quadruplexes

Tracy M. Bryan

MOLECULES (2019)

Article Biochemistry & Molecular Biology

Quantifying the impact of small molecule ligands on G-quadruplex stability against Bloom helicase

Parastoo Maleki et al.

NUCLEIC ACIDS RESEARCH (2019)

Review Chemistry, Multidisciplinary

Applications of guanine quartets in nanotechnology and chemical biology

Loic Stefan et al.

NATURE REVIEWS CHEMISTRY (2019)

Article Multidisciplinary Sciences

Structural basis for DNA unwinding at forked dsDNA by two coordinating Pif1 helicases

Nannan Su et al.

NATURE COMMUNICATIONS (2019)

Review Genetics & Heredity

Helicases FANCJ, RTEL1 and BLM Act on Guanine Quadruplex DNA in Vivo

Peter Lansdorp et al.

Article Biochemistry & Molecular Biology

Thermodynamic and spectroscopic investigations of TMPyP4 association with guanine- and cytosine-rich DNA and RNA repeats of C9orf72

Hasan Alniss et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2018)

Article Biochemistry & Molecular Biology

A minimal threshold of FANCJ helicase activity is required for its response to replication stress or double-strand break repair

Sanjay Kumar Bharti et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

Human RTEL1 stabilizes long G-overhangs allowing telomerase-dependent over-extension

Rosa M. Porreca et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

BLM helicase suppresses recombination at G-quadruplex motifs in transcribed genes

Niek van Wietmarschen et al.

NATURE COMMUNICATIONS (2018)

Review Chemistry, Multidisciplinary

G-Quadruplex: A Regulator of Gene Expression and Its Chemical Targeting

Tian Tian et al.

Article Chemistry, Multidisciplinary

RNA versus DNA G-Quadruplex: The Origin of Increased Stability

Francesco Zaccaria et al.

CHEMISTRY-A EUROPEAN JOURNAL (2018)

Article Multidisciplinary Sciences

Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36

Michael C. Chen et al.

NATURE (2018)

Review Chemistry, Multidisciplinary

Visualizing biologically active small molecules in cells using click chemistry

Tatiana Caneque et al.

NATURE REVIEWS CHEMISTRY (2018)

Article Biochemistry & Molecular Biology

Pif1 is essential for efficient replisome progression through lagging strand G-quadruplex DNA secondary structures

Danielle Dahan et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

Transcriptome-wide identification of transient RNA G-quadruplexes in human cells

Sunny Y. Yang et al.

NATURE COMMUNICATIONS (2018)

Review Biochemistry & Molecular Biology

Interactive Roles of DNA Helicases and Translocases with the Single-Stranded DNA Binding Protein RPA in Nucleic Acid Metabolism

Sanket Awate et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)

Article Biochemistry & Molecular Biology

Residues in the RecQ C-terminal Domain of the Human Werner Syndrome Helicase Are Involved in Unwinding G-quadruplex DNA

Amit Ketkar et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2017)

Article Biochemistry & Molecular Biology

A helical bundle in the N-terminal domain of the BLM helicase mediates dimer and potentially hexamer formation

Jing Shi et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2017)

Article Cell Biology

RECQ-like helicases Sgs1 and BLM regulate R-loop-associated genome instability

Emily Yun-Chia Chang et al.

JOURNAL OF CELL BIOLOGY (2017)

Review Genetics & Heredity

The impact of replication stress on replication dynamics and DNA damage in vertebrate cells

Herve Techer et al.

NATURE REVIEWS GENETICS (2017)

Article Biochemistry & Molecular Biology

DNA-RNA hybrids: the risks of DNA breakage during transcription

Andres Aguilera et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Yeast Sub1 and human PC4 are G-quadruplex binding proteins that suppress genome instability at co-transcriptionally formed G4 DNA

Christopher R. Lopez et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

Involvement of G-triplex and G-hairpin in the multi-pathway folding of human telomeric G-quadruplex

Xi-Miao Hou et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

Mms1 binds to G-rich regions in Saccharomyces cerevisiae and influences replication and genome stability

Katharina Wanzek et al.

NUCLEIC ACIDS RESEARCH (2017)

Review Biotechnology & Applied Microbiology

G-Quadruplexes: Prediction, Characterization, and Biological Application

Chun Kit Kwok et al.

TRENDS IN BIOTECHNOLOGY (2017)

Article Multidisciplinary Sciences

CX-5461 is a DNA G-quadruplex stabilizer with selective lethality in BRCA1/2 deficient tumours

Hong Xu et al.

NATURE COMMUNICATIONS (2017)

Article Biochemistry & Molecular Biology

DNA-RNA hybrids: the risks of DNA breakage during transcription

Andres Aguilera et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Biochemistry & Molecular Biology

60 years ago, Francis Crick changed the logic of biology

Matthew Cobb

PLOS BIOLOGY (2017)

Review Genetics & Heredity

Solving the Telomere Replication Problem

Laetitia Maestroni et al.

Review Crystallography

Structural Basis of DEAH/RHA Helicase Activity

Michael C. Chen et al.

CRYSTALS (2017)

Review Chemistry, Multidisciplinary

Quadruplex nucleic acids as targets for anticancer therapeutics

Stephen Neidle

NATURE REVIEWS CHEMISTRY (2017)

Review Biochemistry & Molecular Biology

G-quadruplex unwinding helicases and their function in vivo

Markus Sauer et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2017)

Review Cell Biology

Bloom's syndrome: Why not premature aging? A comparison of the BLM and WRN helicases

Christelle de Renty et al.

AGEING RESEARCH REVIEWS (2017)

Review Genetics & Heredity

Bloom's Syndrome: Clinical Spectrum, Molecular Pathogenesis, and Cancer Predisposition

Christopher Cunniff et al.

MOLECULAR SYNDROMOLOGY (2017)

Article Biochemistry & Molecular Biology

5′ to 3′ Unfolding Directionality of DNA Secondary Structures by Replication Protein A G-QUADRUPLEXES AND DUPLEXES

Layal Safa et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2016)

Article Biochemistry & Molecular Biology

Interaction of metallacrown complexes with G-quadruplex DNA

Ewa Rajczak et al.

JOURNAL OF INORGANIC BIOCHEMISTRY (2016)

Article Chemistry, Medicinal

Quadruplex Nucleic Acids as Novel Therapeutic Targets

Stephen Neidle

JOURNAL OF MEDICINAL CHEMISTRY (2016)

Article Chemistry, Multidisciplinary

A Small Molecule That Represses Translation of G-Quadruplex-Containing mRNA

Yousuke Katsuda et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2016)

Article Biochemistry & Molecular Biology

Targeting BRCA1 and BRCA2 Deficiencies with G-Quadruplex-Interacting Compounds

Jutta Zimmer et al.

MOLECULAR CELL (2016)

Article Genetics & Heredity

G-quadruplex structures mark human regulatory chromatin

Robert Hansel-Hertsch et al.

NATURE GENETICS (2016)

Article Biochemical Research Methods

rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome

Chun Kit Kwok et al.

NATURE METHODS (2016)

Article Biochemistry & Molecular Biology

G-quadruplex recognition and remodeling by the FANCJ helicase

Colin G. Wu et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

G-quadruplexes and helicases

Oscar Mendoza et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Re-evaluation of G-quadruplex propensity with G4Hunter

Amina Bedrat et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

Cockayne syndrome group A and B proteins converge on transcription-linked resolution of non-B DNA

Morten Scheibye-Knudsen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

RNA G-quadruplexes are globally unfolded in eukaryotic cells and depleted in bacteria

Junjie U. Guo et al.

SCIENCE (2016)

Article Biochemistry & Molecular Biology

Assessment of selectivity of G-quadruplex ligands via an optimised FRET melting assay

Aurore De Rache et al.

BIOCHIMIE (2015)

Review Biochemistry & Molecular Biology

G4-associated human diseases

Nancy Maizels

EMBO REPORTS (2015)

Article Biochemistry & Molecular Biology

G-quadruplexes Significantly Stimulate Pif1 Helicase-catalyzed Duplex DNA Unwinding

Xiao-Lei Duan et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2015)

Article Biotechnology & Applied Microbiology

High-throughput sequencing of DNA G-quadruplex structures in the human genome

Vicki S. Chambers et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemistry & Molecular Biology

Crystal structure of the Bloom's syndrome helicase indicates a role for the HRDC domain in conformational changes

Joseph A. Newman et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

A fluorescence-based helicase assay: application to the screening of G-quadruplex ligands

Oscar Mendoza et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

Insights into the mechanism of a G-quadruplex-unwinding DEAH-box helicase

Michael C. Chen et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

BLM unfolds G-quadruplexes in different structural environments through different mechanisms

Wen-Qiang Wu et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

G-quadruplexes and their regulatory roles in biology

Daniela Rhodes et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Insights into G-quadruplex specific recognition by the DEAH-box helicase RHAU: Solution structure of a peptide-quadruplex complex

Brahim Heddi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Review Genetics & Heredity

Replication of Structured DNA and its implication in epigenetic stability

Valentina Cea et al.

FRONTIERS IN GENETICS (2015)

Article Chemistry, Multidisciplinary

Direct and Single-Molecule Visualization of the Solution-State Structures of G-Hairpin and G-Triplex Intermediates

Arivazhagan Rajendran et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2014)

Article Chemistry, Medicinal

Small-molecule quadruplex-targeted drug discovery

Stephan A. Ohnmacht et al.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2014)

Review Biochemistry & Molecular Biology

The Noncoding RNA Revolution-Trashing Old Rules to Forge New Ones

Thomas R. Cech et al.

Article Biochemistry & Molecular Biology

Determinants of G quadruplex-induced epigenetic instability in REV1-deficient cells

Davide Schiavone et al.

EMBO JOURNAL (2014)

Review Genetics & Heredity

Unravelling the genomic targets of small molecules using high-throughput sequencing

Raphael Rodriguez et al.

NATURE REVIEWS GENETICS (2014)

Review Genetics & Heredity

Insights into RNA structure and function from genome-wide studies

Stefanie A. Mortimer et al.

NATURE REVIEWS GENETICS (2014)

Article Biochemistry & Molecular Biology

Human Rev1 polymerase disrupts G-quadruplex DNA

Sarah Eddy et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

WRN Loss Induces Switching of Telomerase-Independent Mechanisms of Telomere Elongation

April Renee Sandy Gocha et al.

PLOS ONE (2014)

Article Chemistry, Analytical

A label-free G-quadruplex DNA-based fluorescence method for highly sensitive, direct detection of cisplatin

Hualin Yang et al.

SENSORS AND ACTUATORS B-CHEMICAL (2014)

Article Multidisciplinary Sciences

Mechanistic insight into the interaction of BLM helicase with intra-strand G-quadruplex structures

Sujoy Chatterjee et al.

NATURE COMMUNICATIONS (2014)

Article Biotechnology & Applied Microbiology

The N-Terminal Domain of Human DNA Helicase Rtel1 Contains a Redox Active Iron-Sulfur Cluster

Aaron P. Landry et al.

BIOMED RESEARCH INTERNATIONAL (2014)

Article Biochemical Research Methods

Structure of human Bloom's syndrome helicase in complex with ADP and duplex DNA

Michael K. Swan et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2014)

Review Genetics & Heredity

Structural mechanisms of human RecQ helicases WRN and BLM

Ken Kitano

FRONTIERS IN GENETICS (2014)

Article Genetics & Heredity

Constitutional Mutations in RTEL1 Cause Severe Dyskeratosis Congenita

Amanda J. Walne et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2013)

Article Chemistry, Multidisciplinary

Multitasking Water-Soluble Synthetic G-Quartets: From Preferential RNA-Quadruplex Interaction to Biocatalytic Activity

Romain Haudecoeur et al.

CHEMISTRY-A EUROPEAN JOURNAL (2013)

Article Biochemistry & Molecular Biology

Human RTEL1 deficiency causes HoyeraalHreidarsson syndrome with short telomeres and genome instability

Tangui Le Guen et al.

HUMAN MOLECULAR GENETICS (2013)

Article Biochemistry & Molecular Biology

Specialization among Iron-Sulfur Cluster Helicases to Resolve G-quadruplex DNA Structures That Threaten Genomic Stability

Sanjay Kumar Bharti et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2013)

Article Biochemistry & Molecular Biology

Fanconi Anemia Group J Helicase and MRE11 Nuclease Interact To Facilitate the DNA Damage Response

Avvaru N. Suhasini et al.

MOLECULAR AND CELLULAR BIOLOGY (2013)

Article Multidisciplinary Sciences

Pif1 family helicases suppress genome instability at G-quadruplex motifs

Katrin Paeschke et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Physical and functional interaction between yeast Pif1 helicase and Rim1 single-stranded DNA binding protein

Ramanagouda Ramanagoudr-Bhojappa et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Scaffolding protein SPIDR/KIAA0146 connects the Bloom syndrome helicase with homologous recombination repair

Li Wan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

RTEL1 Is a Replisome-Associated Helicase That Promotes Telomere and Genome-Wide Replication

Jean-Baptiste Vannier et al.

SCIENCE (2013)

Review Oncology

DNA helicases involved in DNA repair and their roles in cancer

Robert M. Brosh

NATURE REVIEWS CANCER (2013)

Article Chemistry, Multidisciplinary

Selective RNA Versus DNA G-Quadruplex Targeting by In Situ Click Chemistry

Marco Di Antonio et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2012)

Article Biochemistry & Molecular Biology

RTEL1 Dismantles T Loops and Counteracts Telomeric G4-DNA to Maintain Telomere Integrity

Jean-Baptiste Vannier et al.

Article Biochemistry & Molecular Biology

Assessing the Differential Affinity of Small Molecules for Noncanonical DNA Structures

Loic Stefan et al.

CHEMBIOCHEM (2012)

Review Pharmacology & Pharmacy

Experimental Methods for Studying the Interactions between G-Quadruplex Structures and Ligands

Joaquim Jaumot et al.

CURRENT PHARMACEUTICAL DESIGN (2012)

Review Pharmacology & Pharmacy

G-Quadruplex Binding Ligands: from Naturally Occurring to Rationally Designed Molecules

Tuong Vy Thi Le et al.

CURRENT PHARMACEUTICAL DESIGN (2012)

Article Genetics & Heredity

Genome-wide association study of glioma and meta-analysis

Preetha Rajaraman et al.

HUMAN GENETICS (2012)

Article Biochemistry & Molecular Biology

Small-molecule-induced DNA damage identifies alternative DNA structures in human genes

Raphael Rodriguez et al.

NATURE CHEMICAL BIOLOGY (2012)

Review Genetics & Heredity

DNA secondary structures: stability and function of G-quadruplex structures

Matthew L. Bochman et al.

NATURE REVIEWS GENETICS (2012)

Article Biochemistry & Molecular Biology

FANCJ coordinates two pathways that maintain epigenetic stability at G-quadruplex DNA

Peter Sarkies et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Multimeric BLM is dissociated upon ATP hydrolysis and functions as monomers in resolving DNA structures

Ya-Nan Xu et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

The roles of WRN and BLM RecQ helicases in the Alternative Lengthening of Telomeres

Aaron Mendez-Bermudez et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

5′-UTR RNA G-quadruplexes: translation regulation and targeting

Anthony Bugaut et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

A Genomewide Screen for Suppressors of Alu-Mediated Rearrangements Reveals a Role for PIF1

Karen M. Chisholm et al.

PLOS ONE (2012)

Article Chemistry, Multidisciplinary

Topological Characterization of Nucleic Acid G-Quadruplexes by UV Absorption and Circular Dichroism

Andreas Ioannis Karsisiotis et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2011)

Article Biochemistry & Molecular Biology

Induction of G-quadruplex DNA structure by Zn(II) 5,10,15,20-tetrakis (N-methyl-4-pyridyl)porphyrin

Amlan J. Bhattacharjee et al.

BIOCHIMIE (2011)

Review Chemistry, Multidisciplinary

Methods for investigating G-quadruplex DNA/ligand interactions

Pierre Murat et al.

CHEMICAL SOCIETY REVIEWS (2011)

Article Chemistry, Multidisciplinary

Telomere Structure and Stability: Covalency in Hydrogen Bonds, Not Resonance Assistance, Causes Cooperativity in Guanine Quartets

Celia Fonseca Guerra et al.

CHEMISTRY-A EUROPEAN JOURNAL (2011)

Article Biochemistry & Molecular Biology

Interaction between the helicases genetically linked to Fanconi anemia group J and Bloom's syndrome

Avvaru N. Suhasini et al.

EMBO JOURNAL (2011)

Review Oncology

Hereditary breast cancer and the BRCA1-associated FANCJ/BACH1/BRIP1

Sharon B. Cantor et al.

FUTURE ONCOLOGY (2011)

Article Biochemistry & Molecular Biology

Single Molecule Studies of Physiologically Relevant Telomeric Tails Reveal POT1 Mechanism for Promoting G-quadruplex Unfolding

Hong Wang et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

Review Genetics & Heredity

Understanding the transcriptome through RNA structure

Yue Wan et al.

NATURE REVIEWS GENETICS (2011)

Article Biochemistry & Molecular Biology

RTEL1: an essential helicase for telomere maintenance and the regulation of homologous recombination

Evert-Jan Uringa et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

DNA Binding Induces Dimerization of Saccharomyces cerevisiae Pif1

Sergio Barranco-Medina et al.

BIOCHEMISTRY (2010)

Review Biochemistry & Molecular Biology

SF1 and SF2 helicases: family matters

Margaret E. Fairman-Williams et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2010)

Review Genetics & Heredity

Unwinding the functions of the Pif1 family helicases

Matthew L. Bochman et al.

DNA REPAIR (2010)

Article Biochemistry & Molecular Biology

5,10,15,20-Tetra-(N-methyl-3-pyridyl)porphyrin destabilizes the antiparallel telomeric quadruplex d(TTAGGG)4

Yu. V. Dutikova et al.

MOLECULAR BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Structure and function of the regulatory HRDC domain from human Bloom syndrome protein

Young Mee Kim et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Genetic instability triggered by G-quadruplex interacting Phen-DC compounds in Saccharomyces cerevisiae

Aurele Piazza et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

How long is too long? Effects of loop size on G-quadruplex stability

Aurore Guedin et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Chemistry, Organic

A non-empirical chromophoric interpretation of CD spectra of DNA G-quadruplex structures

Stefano Masiero et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

A comparison of DNA and RNA quadruplex structures and stabilities

Astrid Joachimi et al.

BIOORGANIC & MEDICINAL CHEMISTRY (2009)

Article Chemistry, Multidisciplinary

A Small Molecule That Disrupts G-Quadruplex DNA Structure and Enhances Gene Expression

Zoe. A. E. Waller et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)

Article Biochemistry & Molecular Biology

Circular dichroism and conformational polymorphism of DNA

Jaroslav Kypr et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Chemistry, Multidisciplinary

A metal-mediated conformational switch controls G-quadruplex binding affinity

David Monchaud et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2008)

Article Chemistry, Multidisciplinary

Triarylpyridines: a versatile small molecule scaffold for G-quadruplex recognition

Zoe A. E. Waller et al.

CHEMICAL COMMUNICATIONS (2008)

Article Biochemistry & Molecular Biology

Mutagenic capacity of endogenous G4 DNA underlies genome instability in FANCJ-defective C-elegans

Evelien Kruisselbrink et al.

CURRENT BIOLOGY (2008)

Article Cell Biology

DNA helicases Sgs1 and BLM promote DNA double-strand break resection

Serge Gravel et al.

GENES & DEVELOPMENT (2008)

Article Biochemistry & Molecular Biology

FANCJ Is a Structure-specific DNA Helicase Associated with the Maintenance of Genomic G/C Tracts

Timothy B. C. London et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

The human RecQ helicases, BLM and RECQ1, display distinct DNA substrate specificities

Venkateswarlu Popuri et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Chemistry, Multidisciplinary

Structural basis of DNA quadruplex recognition by an acridine drug

Nancy H. Campbell et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Article Chemistry, Multidisciplinary

A Novel Small Molecule That Alters Shelterin Integrity and Triggers a DNA-Damage Response at Telomeres

Raphael Rodriguez et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Article Biochemistry & Molecular Biology

The Schizosaccharomyces pombe Pfh1p DNA Helicase Is Essential for the Maintenance of Nuclear and Mitochondrial DNA

Stefan F. Pinter et al.

MOLECULAR AND CELLULAR BIOLOGY (2008)

Article Physics, Multidisciplinary

Well-tempered metadynamics: A smoothly converging and tunable free-energy method

Alessandro Barducci et al.

PHYSICAL REVIEW LETTERS (2008)

Review Chemistry, Organic

A hitchhiker's guide to G-quadruplex ligands

David Monchaud et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2008)

Article Biochemical Research Methods

Quadruplex melting

Phillip A. Rachwal et al.

METHODS (2007)

Article Multidisciplinary Sciences

Reevaluation of telomerase inhibition by quadruplex ligands and their mechanisms of action

Anne De Cian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Pharmacology & Pharmacy

Mechanism of acridine-based telomerase inhibition and telomere shortening

Mekala Gunaratnam et al.

BIOCHEMICAL PHARMACOLOGY (2007)

Article Biochemistry & Molecular Biology

The yeast Pif1p DNA helicase preferentially unwinds RNA-DNA substrates

Jean-Baptiste Boule et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemical Research Methods

Fluorescence-based melting assays for studying quadruplex ligands

Anne De Cian et al.

METHODS (2007)

Article Biochemistry & Molecular Biology

Sequence effects of single base loops in intramolecular quadruplex DNA

Phillip A. Rachwal et al.

FEBS LETTERS (2007)

Article Chemistry, Multidisciplinary

A new anticoagulant-antidote pair: Control of thrombin activity by aptamers and porphyrins

Astrid Joachimi et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Biochemistry & Molecular Biology

Structural basis for binding of porphyrin to human telomeres

Gary N. Parkinson et al.

BIOCHEMISTRY (2007)

Article Chemistry, Multidisciplinary

Highly efficient G-quadruplex recognition by bisquinolinium compounds

Anne De Cian et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Review Biochemistry & Molecular Biology

Quadruplex DNA: sequence, topology and structure

Sarah Burge et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Human replication protein a unfolds telomeric G-quadruplexes

Tonatiuh Romero Salas et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

The DNA repair helicases XPD and FancJ have essential iron-sulfur domains

Jana Rudolf et al.

MOLECULAR CELL (2006)

Article Biochemistry & Molecular Biology

POT1 stimulates RecQ helicases WRN and BLM to unwind telomeric DNA substrates

PL Opresko et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2005)

Article Genetics & Heredity

The BRCA1-interacting helicase BRIP1 is deficient in Fanconi anemia

O Levran et al.

NATURE GENETICS (2005)

Article Genetics & Heredity

The DNA helicase BRIP1 is defective in Fanconi anemia complementation group J

M Levitus et al.

NATURE GENETICS (2005)

Article Multidisciplinary Sciences

Human POT1 disrupts telomeric G-quadruplexes allowing telomerase extension in vitro

AJ Zaug et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter

AT Phan et al.

NATURE CHEMICAL BIOLOGY (2005)

Article Biochemistry & Molecular Biology

The HRDC domain of BLM is required for the dissolution of double Holliday junctions

L Wu et al.

EMBO JOURNAL (2005)

Article Biochemistry & Molecular Biology

Highly prevalent putative quadruplex sequence motifs in human DNA

AK Todd et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Prevalence of quadruplexes in the human genome

JL Huppert et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Cell Biology

Timeline - Happy Hollidays: 40th anniversary of the Holliday junction

YL Liu et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Drug recognition and stabilisation of the parallel-stranded DNA quadruplex d(TTAGGGT)4 containing the human telomeric repeat

E Gavathiotis et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)

Article Biochemistry & Molecular Biology

The cationic porphyrin TMPyP4 destabilizes the tetraplex form of the fragile X syndrome expanded sequence d(CGG)n

P Weisman-Shomer et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Chemistry, Organic

The stability of intramolecular DNA quadruplexes with extended loops forming inter- and intra-loop duplexes

A Risitano et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2003)

Article Biochemistry & Molecular Biology

G4 DNA unwinding by BLM and Sgs1p: substrate specificity and substrate-specific inhibition

MD Huber et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Multidisciplinary Sciences

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription

A Siddiqui-Jain et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei

C Schaffitzel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Biochemistry & Molecular Biology

The Bloom's and Werner's syndrome proteins are DNA structure-specific helicases

P Mohaghegh et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Multidisciplinary Sciences

Pot1, the putative telomere end-binding protein in fission yeast and humans

P Baumann et al.

SCIENCE (2001)

Article Biochemistry & Molecular Biology

Replication protein A physically interacts with the Bloom's syndrome protein and stimulates its helicase activity

RM Brosh et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)

Article Biochemistry & Molecular Biology

The Bloom's syndrome gene product interacts with topoisomerase III

L Wu et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)

Article Multidisciplinary Sciences

Overexpression of M68/DcR3 in human gastrointestinal tract tumors independent of gene amplification and its location in a four-gene cluster

C Bai et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)