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A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts
Laura Milligan et al.
MOLECULAR AND CELLULAR BIOLOGY (2008)
Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-Like proteins in Arabidopsis thaliana
Heike Lange et al.
MOLECULAR AND CELLULAR BIOLOGY (2008)
Polyadenylation Linked to Transcription Termination Directs the Processing of snoRNA Precursors in Yeast
Pawel Grzechnik et al.
MOLECULAR CELL (2008)
Structure of the active subunit of the yeast exosome core, Rrp44: Diverse modes of substrate recruitment in the RNase II nuclease family
Esben Lorentzen et al.
MOLECULAR CELL (2008)
Endonucleolytic RNA cleavage by a eukaryotic exosome
Alice Lebreton et al.
NATURE (2008)
Mouse Eri1 interacts with the ribosome and catalyzes 5.8S rRNA processing
K. Mark Ansel et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
The exonuclease ERI-1 has a conserved dual role in 5.8S rRNA processing and RNAi
Harrison W. Gabel et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
Evidence for core exosome independent function of the nuclear exoribonuclease Rrp6p
Kevin P. Callahan et al.
NUCLEIC ACIDS RESEARCH (2008)
Footprinting analysis demonstrates extensive similarity between eukaryotic RNase P and RNase MRP holoenzymes
Olga Esakova et al.
RNA (2008)
ISG20L2, a novel vertebrate nucleolar exoribonuclease involved in ribosome biogenesis
Yohann Coute et al.
MOLECULAR & CELLULAR PROTEOMICS (2008)
Characterization of a ribonuclease III-like protein required for cleavage of the pre-rRNA in the 3′ETS in Arabidopsis
P. Comella et al.
NUCLEIC ACIDS RESEARCH (2008)
Characterization of the essential activities of Saccharomyces cerevisiae Mtr4p, a 3′→5′ helicase partner of the nuclear exosome
Jade Bernstein et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Degradation of hypomodified tRNA(i)(Met) in vivo involves RNA-dependent ATPase activity of the DExH helicase Mtr4p
Xuying Wang et al.
RNA (2008)
Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome
Julia A. Chekanova et al.
CELL (2007)
Interactions between subunits of Saccharomyces cerevisiae RNase MRP support a conserved eukaryotic RNase P/MRP architecture
Tanya V. Aspinall et al.
NUCLEIC ACIDS RESEARCH (2007)
The PMC2NT domain of the catalytic exosome subunit Rrp6p provides the interface for binding with its cofactor Rrp47p, a nucleic acid-binding protein
Jonathan A. Stead et al.
NUCLEIC ACIDS RESEARCH (2007)
C1D and hMtr4p associate with the human exosome subunit PM/Scl-100 and are involved in pre-rRNA processing
Geurt Schilders et al.
NUCLEIC ACIDS RESEARCH (2007)
Eukaryotic RNase P RNA mediates cleavage in the absence of protein
Ema Kikovska et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Ribonuclease revisited: structural insights into ribonuclease III family enzymes
Ian J. MacRae et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2007)
A single subunit, Dis3, is essentially responsible for yeast exosome core activity
Andrzej Dziembowski et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)
Reconstitution, activities, and structure of the eukaryotic RNA exosome
Quansheng Liu et al.
CELL (2006)
Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs
Kirsten Mattison et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
Structures of the PIN domains of SMG6 and SMG5 reveal a nuclease within the mRNA surveillance complex
Filip Glavan et al.
EMBO JOURNAL (2006)
Structure of an AAGU tetraloop and its contribution to substrate selection by yeast RNase III
Cyril Gaudin et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Characterization of the reactivity determinants of a novel hairpin substrate of yeast RNase III
Ghada Ghazal et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Characterization of 3′ hExo, a 3′ exonuclease specifically interacting with the 3′ end of histone mRNA
Xiao-cui Yang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
Ribosome biogenesis and cell growth: mTOR coordinates transcription by all three classes of nuclear RNA polymerases
C. Mayer et al.
ONCOGENE (2006)
Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain
Soren F. Midtgaard et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Fcf1p and Fcf2p are novel nucleolar Saccharomyces cerevisiae proteins involved in pre-rRNA processing
Bozenna Rempola et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2006)
Conserved ribonuclease, Eri1, negatively regulates heterochromatin assembly in fission yeast
Tetsushi Iida et al.
CURRENT BIOLOGY (2006)
Differential association of protein subunits with the human RNase MRP and RNase P complexes
Tim J. M. Welting et al.
RNA (2006)
The PINc domain protein Utp24, a putative nuclease, is required for the early cleavage steps in 18S rRNA maturation
Franziska Bleichert et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
GTP-dependent formation of a ribonucleoprotein subcomplex required for ribosome biogenesis
K Karbstein et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Yeast Trf5p is a nuclear poly(A) polymerase
J Houseley et al.
EMBO REPORTS (2006)
Nrd1 interacts with the nuclear exosome for 3′ processing of RNA polymerase II transcripts
L Vasiljeva et al.
MOLECULAR CELL (2006)
An essential GTPase promotes assembly of preribosomal RNA processing complexes
K Karbstein et al.
MOLECULAR CELL (2005)
Roles of eukaryotic ribosomal proteins in maturation and transport of pre-18S rRNA and ribosome function
S Ferreira-Cerca et al.
MOLECULAR CELL (2005)
Rat1p and Rai1p function with the nuclear exosome in the processing and degradation of rRNA precursors
F Fang et al.
RNA (2005)
Nuclear export and cytoplasmic processing of precursors to the 40S ribosomal subunits in mammalian cells
J Rouquette et al.
EMBO JOURNAL (2005)
Nop53p is required for late 60S ribosome subunit maturation and nuclear export in yeast
E Thomson et al.
RNA (2005)
Biochemical and genomic analysis of substrate recognition by the double-stranded RNA binding domain of yeast RNase III
AK Henras et al.
RNA (2005)
RNA degradation by the exosome is promoted by a nuclear polyade nylation complex
J LaCava et al.
CELL (2005)
Cryptic Pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
F Wyers et al.
CELL (2005)
A new yeast poly(A) polymerase complex involved in RNA quality control
S Vanácová et al.
PLOS BIOLOGY (2005)
Characterization and purification of Saccharomyces cerevisiae RNase MRP reveals a new unique protein component
K Salinas et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2005)
A conserved major groove antideterminant for Saccharomyces cerevisiae RNase III recognition
M Sam et al.
BIOCHEMISTRY (2005)
Release of the export adapter, Nmd3p, from the 60S ribosomal subunit requires Rpl10p and the cytoplasmic GTPase Lsg1p
J Hedges et al.
EMBO JOURNAL (2005)
Catalytic mechanism of Escherichia coli ribonuclease III: kinetic and inhibitor evidence for the involvement of two magnesium ions in RNA phosphodiester hydrolysis .
W Sun et al.
NUCLEIC ACIDS RESEARCH (2005)
MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation
G Schilders et al.
NUCLEIC ACIDS RESEARCH (2005)
Identification and analysis of ribonuclease P and MRP RNA in a broad range of eukaryotes
P Piccinelli et al.
NUCLEIC ACIDS RESEARCH (2005)
Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease
VL Arcus et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
A conserved siRNA-degrading RNase negatively regulates RNA interference in C-elegans
S Kennedy et al.
NATURE (2004)
RNase MRP cleaves the CLB2 mRNA to promote cell cycle progression:: Novel method of mRNA degradation
T Gill et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
A plant snoRNP complex containing snoRNAs, fibrillarin, and nucleolin-like proteins is competent for both rRNA gene binding and pre-rRNA processing in vitro
J Sáez-Vasquez et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
Crystal structure of a PIN (PilT N-terminus) domain (AF0591) from Archaeoglobus fulgidus at 1.90 A resolution
I Levin et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
A pre-ribosome with a short article tadpole-like structure functions in ATP-dependent maturation of 60S subunits
TA Nissan et al.
MOLECULAR CELL (2004)
Single processing center models for human dicer and bacterial RNase III
HD Zhang et al.
CELL (2004)
A new α-helical extension promotes RNA binding by the dsRBD of Rnt1p RNAse III
N Leulliot et al.
EMBO JOURNAL (2004)
The RNA catabolic enzymes Rex4p, Rnt1p, and Dbr1p show genetic interaction with trans-acting factors involved in processing of ITS1 in Saccharomyces cerevisiae pre-rRNA
AW Faber et al.
RNA (2004)
Human 5′→3′ exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites
S West et al.
NATURE (2004)
Functional and physical interactions of Faf1p, a Saccharomyces cerevisiae nucleolar protein
W Karkusiewicz et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2004)
Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III
HH Wu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
PIN domain of Nob1p is required for D-site cleavage in 20S pre-rRNA
A Fatica et al.
RNA (2004)
Crystallographic structure of the nuclease domain of 3′hExo, a DEDDh family member, bound to rAMP
Y Cheng et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Ribosome biogenesis: of knobs and RNA processing
S Granneman et al.
EXPERIMENTAL CELL RESEARCH (2004)
Global analysis of protein localization in budding yeast
WK Huh et al.
NATURE (2003)
Rrp47p is an exosome-associated protein required for the 3′ processing of stable RNAs
P Mitchell et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
Conservation of RNase III processing pathways and specificity in hemiascomycetes
G Chanfreau
EUKARYOTIC CELL (2003)
A 3′ exonuclease that specifically interacts with the 3′ end of histone mRNA
Z Dominski et al.
MOLECULAR CELL (2003)
Coordinated nuclear export of 60S ribosomal subunits and NMD3 in vertebrates
CR Trotta et al.
EMBO JOURNAL (2003)
Sequence dependence of substrate recognition and cleavage by yeast RNase III
B Lamontagne et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Intersection of the Kap123p-mediated nuclear import and ribosome export pathways
Y Sydorskyy et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
Nob1p is required for cleavage of the 3′ end of 18S rRNA
A Fatica et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
Crystal structure of the specificity domain of ribonuclease P
AS Krasilnikov et al.
NATURE (2003)
Deletions in the S1 domain of Rrp5p cause processing at a novel site in ITS1 of yeast pre-rRNA that depends on Rex4p
NA Eppens et al.
NUCLEIC ACIDS RESEARCH (2002)
Ng12p is a Ccr4p-like RNA nuclease essential for the final step in 3'-end processing of 5.8S rRNA in Saccharomyces cerevisiae
AW Faber et al.
RNA (2002)
Phylogenetic analysis of the structure of RNase MRP RNA in yeasts
X Li et al.
RNA (2002)
Subcellular localization of the yeast proteome
A Kumar et al.
GENES & DEVELOPMENT (2002)
The σ70-like motif:: A eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis
KA Wehner et al.
MOLECULAR CELL (2002)
RAC protein directs the complete removal of the 3′ external transcribed spacer by the Pac1 nuclease
K Spasov et al.
MOLECULAR CELL (2002)
Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing
I Lebars et al.
EMBO JOURNAL (2001)
A novel family of RNA tetraloop structure forms the recognition site for Saccharomyces cerevisiae RNase III
HH Wu et al.
EMBO JOURNAL (2001)
Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage
J Blaszczyk et al.
STRUCTURE (2001)
Basic domains target protein subunits of the RNase MRP complex to the nucleolus independently of complex association
H van Eenennaam et al.
MOLECULAR BIOLOGY OF THE CELL (2001)
Bms1p, a G-domain-containing protein, associates with Rcl1p and is required for 18S rRNA biogenesis in yeast
T Wegierski et al.
RNA (2001)
Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast
D Gelperin et al.
RNA (2001)
Processing of 20S pre-rRNA to 18S ribosomal RNA in yeast requires Rrp10p, an essential non-ribosomal cytoplasmic protein
E Vanrobays et al.
EMBO JOURNAL (2001)
Function and subnuclear distribution of Rpp21, a protein subunit of the human ribonucleoprotein ribonuclease P
N Jarrous et al.
RNA (2001)
The dhp1+ gene, encoding a putative nuclear 5′→3′ exoribonuclease, is required for proper chromosome segregation in fission yeast
T Shobuike et al.
NUCLEIC ACIDS RESEARCH (2001)
Mutations in the RNA component of RNase MRP cause a pleiotropic human disease, cartilage-hair hypoplasia
M Ridanpää et al.
CELL (2001)
PIN domains in nonsense-mediated mRNA decay and RNAi
PM Clissold et al.
CURRENT BIOLOGY (2000)
Novel features of the XRN-family in Arabidopsis:: Evidence that AtXRN4, one of several orthologs of nuclear Xrn2p/Rat1p, functions in the cytoplasm
JP Kastenmayer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5′→3′ exonucleases
TH Geerlings et al.
RNA (2000)
Human RNase III is a 160-kDa protein involved in preribosomal RNA processing
HJ Wu et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8 S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells
JA Chekanova et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
SAF-Box, a conserved protein domain that specifically recognizes scaffold attachment region DNA
M Kipp et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)
Substrate recognition by a eukaryotic RNase III:: The double-stranded RNA-binding domain of Rnt1p selectively binds RNA containing a 5′-AGNN-3′ tetraloop
R Nagel et al.
RNA (2000)
Precursors to the U3 small nucleolar RNA lack small nucleolar RNP proteins but are stabilized by La binding
J Kufel et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)
Degradation of ribosomal RNA precursors by the exosome
Christine Allmang et al.
NUCLEIC ACIDS RESEARCH (2000)
Rcl1p, the yeast protein similar to the RNA 3′-phosphate cyclase, associates with U3 snoRNP and is required for 18S rRNA biogenesis
E Billy et al.
EMBO JOURNAL (2000)
Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast
A van Hoof et al.
EMBO JOURNAL (2000)
The N-terminal domain that distinguishes yeast from bacterial RNase III contains a dimerization signal required for efficient double-stranded RNA cleavage
B Lamontagne et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)
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