期刊
MOLECULAR BIOLOGY AND EVOLUTION
卷 38, 期 9, 页码 4039-4042出版社
OXFORD UNIV PRESS
DOI: 10.1093/molbev/msab166
关键词
phylogeny; data integration; data visualization; software
资金
- National Key R&D Program of China [2016YFC0901600]
- National Natural Science Foundation of China [81971895]
- Special Support Plan for Outstanding Talents of Guangdong Province [2019JC05Y340]
- Southern Medical University
ggtreeExtra is a universal tool for visualizing tree data, supporting various data types and visualization methods. By integrating evolutionary statistics and external data, it extends the applications of phylogenetic trees in different disciplines.
We present the ggtreeExtra package for visualizing heterogeneous data with a phylogenetic tree in a circular or rectangular layout (https://www.bioconductor.org/packages/ggtreeExtra). The package supports more data types and visualization methods than other tools. It supports using the grammar of graphics syntax to present data on a tree with richly annotated layers and allows evolutionary statistics inferred by commonly used software to be integrated and visualized with external data. GgtreeExtra is a universal tool for tree data visualization. It extends the applications of the phylogenetic tree in different disciplines by making more domain-specific data to be available to visualize and interpret in the evolutionary context.
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