4.2 Review

Clinical applications of quantitative proteomics using targeted and untargeted data-independent acquisition techniques

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Building ProteomeTools based on a complete synthetic human proteome

Daniel P. Zolg et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Opening a SWATH Window on Posttranslational Modifications: Automated Pursuit of Modified Peptides

Andrew Keller et al.

MOLECULAR & CELLULAR PROTEOMICS (2016)

Article Obstetrics & Gynecology

Evaluation of proteomic biomarkers associated with circulating microparticles as an effective means to stratify the risk of spontaneous preterm birth

David E. Cantonwine et al.

AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY (2016)

Article Biochemistry & Molecular Biology

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome

Ulrike Kusebauch et al.

Review Biochemical Research Methods

Clinical translation of MS-based, quantitative plasma proteomics: status, challenges, requirements, and potential

Andrew J. Percy et al.

EXPERT REVIEW OF PROTEOMICS (2016)

Article Oncology

Identifying Urinary and Serum Exosome Biomarkers for Radiation Exposure Using a Data Dependent Acquisition and SWATH-MS Combined Workflow

Shilpa Kulkarni et al.

INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS (2016)

Article Biochemical Research Methods

An Automated Pipeline to Monitor System Performance in Liquid Chromatography-Tandem Mass Spectrometry Proteomic Experiments

Michael S. Bereman et al.

JOURNAL OF PROTEOME RESEARCH (2016)

Article Biochemical Research Methods

Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH)

Jesse G. Meyer et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2016)

Editorial Material Biotechnology & Applied Microbiology

Quantifying the human proteome

Amanda G. Paulovich et al.

NATURE BIOTECHNOLOGY (2016)

Article Biotechnology & Applied Microbiology

A multicenter study benchmarks software tools for label-free proteome quantification

Pedro Navarro et al.

NATURE BIOTECHNOLOGY (2016)

Article Biochemical Research Methods

TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics

Hannes L. Rost et al.

NATURE METHODS (2016)

Editorial Material Biochemical Research Methods

Applications and Developments in Targeted Proteomics: From SRM to DIA/SWATH

Ruedi Aebersold et al.

PROTEOMICS (2016)

Article Biochemical Research Methods

A reference library of peripheral blood mononuclear cells for SWATH-MS analysis

Carolina Silva et al.

PROTEOMICS CLINICAL APPLICATIONS (2016)

Article Biochemical Research Methods

Rapid label-free profiling of oral cancer biomarker proteins using nano-UPLC-Q-TOF ion mobility mass spectrometry

Ala. F. Nassar et al.

PROTEOMICS CLINICAL APPLICATIONS (2016)

Article Reproductive Biology

Applying SWATH Mass Spectrometry to Investigate Human Cervicovaginal Fluid During the Menstrual Cycle

Kanchan Vaswani et al.

BIOLOGY OF REPRODUCTION (2015)

Article Biochemical Research Methods

The Use of Variable Q1 Isolation Windows Improves Selectivity in LC-SWATH-MS Acquisition

Ying Zhang et al.

JOURNAL OF PROTEOME RESEARCH (2015)

Article Biochemical Research Methods

Quantification of SAHA-Dependent Changes in Histone Modifications Using Data-Independent Acquisition Mass Spectrometry

Kimberly A. Krautkramer et al.

JOURNAL OF PROTEOME RESEARCH (2015)

Article Biochemical Research Methods

Biomarker Discovery and Verification of Esophageal Squamous Cell Carcinoma Using Integration of SWATH/MRM

Guixue Hou et al.

JOURNAL OF PROTEOME RESEARCH (2015)

Article Biochemical Research Methods

Quantitative proteogenomics of human pathogens using DIA-MS

Lars Malmstroem et al.

JOURNAL OF PROTEOMICS (2015)

Review Biochemical Research Methods

Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data

Ying S. Ting et al.

MOLECULAR & CELLULAR PROTEOMICS (2015)

Article Biochemical Research Methods

Reproducible and Consistent Quantification of the Saccharomyces cerevisiae Proteome by SWATH-mass spectrometry

Nathalie Selevsek et al.

MOLECULAR & CELLULAR PROTEOMICS (2015)

Article Biochemistry & Molecular Biology

Quantitative variability of 342 plasma proteins in a human twin population

Yansheng Liu et al.

MOLECULAR SYSTEMS BIOLOGY (2015)

Letter Biochemical Research Methods

Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files

Yuanyue Li et al.

NATURE METHODS (2015)

Letter Biochemical Research Methods

MSPLIT-DIA: sensitive peptide identification for data-independent acquisition

Jian Wang et al.

NATURE METHODS (2015)

Article Biochemical Research Methods

DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics

Chih-Chiang Tsou et al.

NATURE METHODS (2015)

Article Biochemical Research Methods

Multiplexed peptide analysis using data-independent acquisition and Skyline

Jarrett D. Egertson et al.

NATURE PROTOCOLS (2015)

Article Biochemistry & Molecular Biology

SWATH analysis of the synaptic proteome in Alzheimer's disease

Rachel Yoon Kyung Chang et al.

NEUROCHEMISTRY INTERNATIONAL (2015)

Review Biochemical Research Methods

Using data-independent, high-resolution mass spectrometry in protein biomarker research: Perspectives and clinical applications

Tatjana Sajic et al.

PROTEOMICS CLINICAL APPLICATIONS (2015)

Review Biochemical Research Methods

Tools for monitoring system suitability in LC MS/MS centric proteomic experiments

Michael S. Bereman

PROTEOMICS (2015)

Article Biochemistry & Molecular Biology

Advances in multiplexed MRM-based protein biomarker quantitation toward clinical utility

Andrew J. Percy et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2014)

Article Biochemical Research Methods

A framework for installable external tools in Skyline

Daniel Broudy et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Panorama: A Targeted Proteomics Knowledge Base

Vagisha Sharma et al.

JOURNAL OF PROTEOME RESEARCH (2014)

Article Biochemical Research Methods

Technical considerations for large-scale parallel reaction monitoring analysis

Sebastien Gallien et al.

JOURNAL OF PROTEOMICS (2014)

Article Biochemical Research Methods

Mass Spectral Enhanced Detection of Ubls Using SWATH Acquisition: MEDUSA-Simultaneous Quantification of SUMO and Ubiquitin-Derived Isopeptides

John R. Griffiths et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2014)

Letter Biotechnology & Applied Microbiology

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

Hannes L. Roest et al.

NATURE BIOTECHNOLOGY (2014)

Article Multidisciplinary Sciences

A repository of assays to quantify 10,000 human proteins by SWATH-MS

George Rosenberger et al.

SCIENTIFIC DATA (2014)

Editorial Material Biochemical Research Methods

Peptides aplenty

Allison Doerr

NATURE METHODS (2013)

Article Biochemical Research Methods

METHOD OF THE YEAR Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry

Michael A. Gillette et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

Ben C. Collins et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS

Yansheng Liu et al.

PROTEOMICS (2013)

Article Biotechnology & Applied Microbiology

Multiple Biomarker Panels for Early Detection of Breast Cancer in Peripheral Blood

Fan Zhang et al.

BIOMED RESEARCH INTERNATIONAL (2013)

Article Biochemical Research Methods

Targeted Proteomic Quantification on Quadrupole-Orbitrap Mass Spectrometer

Sebastien Gallien et al.

MOLECULAR & CELLULAR PROTEOMICS (2012)

Review Biochemical Research Methods

Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

Paola Picotti et al.

NATURE METHODS (2012)

Article Cell Biology

Reproducible Quantification of Cancer-Associated Proteins in Body Fluids Using Targeted Proteomics

Ruth Huttenhain et al.

SCIENCE TRANSLATIONAL MEDICINE (2012)

Article Biochemical Research Methods

XDIA: improving on the label-free data-independent analysis

Paulo C. Carvalho et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Brendan MacLean et al.

BIOINFORMATICS (2010)

Article Chemistry, Analytical

Precursor Acquisition Independent From Ion Count: How to Dive Deeper into the Proteomics Ocean

Alexandre Panchaud et al.

ANALYTICAL CHEMISTRY (2009)

Article Biochemical Research Methods

Absolute quantification of proteins by LCMSE - A virtue of parallel MS acquisition

JC Silva et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)