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Systems-wide proteomic characterization of combinatorial post-translational modification patterns
Nicolas L. Young et al.
EXPERT REVIEW OF PROTEOMICS (2010)
Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis
Noelle M. Griffin et al.
NATURE BIOTECHNOLOGY (2010)
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling
Guoqiang Xu et al.
NATURE BIOTECHNOLOGY (2010)
Super-SILAC mix for quantitative proteomics of human tumor tissue
Tamar Geiger et al.
NATURE METHODS (2010)
An improved SUMmOn-based methodology for the identification of ubiquitin and ubiquitin-like protein conjugation sites identifies novel ubiquitin-like protein chain linkages
Stanley M. Jeram et al.
PROTEOMICS (2010)
Quantitative Proteomics Reveals the Function of Unconventional Ubiquitin Chains in Proteasomal Degradation
Ping Xu et al.
CELL (2009)
Efficient protection and isolation of ubiquitylated proteins using tandem ubiquitin-binding entities
Roland Hjerpe et al.
EMBO REPORTS (2009)
Proteomics Analysis of Nucleolar SUMO-1 Target Proteins upon Proteasome Inhibition
Vittoria Matafora et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
An inhibitor of NEDD8-activating enzyme as a new approach to treat cancer
Teresa A. Soucy et al.
NATURE (2009)
A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics
Juergen Cox et al.
NATURE PROTOCOLS (2009)
Systematic study of protein sumoylation: Development of a site-specific predictor of SUMOsp 2.0
Jian Ren et al.
PROTEOMICS (2009)
Using mass spectrometry to identify ubiquitin and ubiquitin-like protein conjugation sites
Stanley M. Jeram et al.
PROTEOMICS (2009)
Characterization of polyubiquitin chain structure by middle-down mass spectrometry
Ping Xu et al.
ANALYTICAL CHEMISTRY (2008)
Ribosomal proteins are targets for the NEDD8 pathway
Dimitris P. Xirodimas et al.
EMBO REPORTS (2008)
PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
Eric W. Deutsch et al.
EMBO REPORTS (2008)
Arsenic trioxide stimulates SUMO-2/3 modification leading to RNF4-dependent proteolytic targeting of PML
Stefan R. Weisshaar et al.
FEBS LETTERS (2008)
A targeted proteomic analysis of the ubiquitin-like modifier Nedd8 and associated proteins
Jeffrey Jones et al.
JOURNAL OF PROTEOME RESEARCH (2008)
Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry
David Meierhofer et al.
JOURNAL OF PROTEOME RESEARCH (2008)
The Ubiquitin-Proteasome System Is a Key Component of the SUMO-2/3 Cycle
Joost Schimmel et al.
MOLECULAR & CELLULAR PROTEOMICS (2008)
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
Juergen Cox et al.
NATURE BIOTECHNOLOGY (2008)
Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry
Michael L. Nielsen et al.
NATURE METHODS (2008)
Ubiquitin-dependent proteolytic control of SUMO conjugates
Kristina Uzunova et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
SUMO-targeted ubiquitin ligases in genome stability
John Prudden et al.
EMBO JOURNAL (2007)
Conserved function of RNF4 family proteins in eukaryotes: targeting a ubiquitin ligase to SUMOylated proteins
Huaiyu Sun et al.
EMBO JOURNAL (2007)
Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast
Ronish Gupta et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Chip-based analysis of SUMO (small ubiquitin-like modifier) conjugation to a target protein
Young-Hee Oh et al.
BIOSENSORS & BIOELECTRONICS (2007)
Protein labeling by iTRAQ: A new tool for quantitative mass spectrometry in proteome research
Sebastian Wiese et al.
PROTEOMICS (2007)
Proteasome-independent functions of ubiquitin in endocytosis and signaling
Debdyuti Mukhopadhyay et al.
SCIENCE (2007)
Distinct and overlapping sets of SUMO-1 and SUMO-2 target proteins revealed by quantitative proteomics
Alfred C. O. Vertegaal et al.
MOLECULAR & CELLULAR PROTEOMICS (2006)
SUMOsp: a web server for sumoylation site prediction
Yu Xue et al.
NUCLEIC ACIDS RESEARCH (2006)
Link between the ubiquitin conjugation system and the ISG15 conjugation system: ISG15 conjugation to the UbcH6 ubiquitin E2 enzyme
T Takeuchi et al.
JOURNAL OF BIOCHEMISTRY (2005)
An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
D Schwartz et al.
NATURE BIOTECHNOLOGY (2005)
Proteomic identification of proteins conjugated to ISG15 in mouse and human cells
NV Giannakopoulos et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2005)
ISG15 modification of Ubc13 suppresses its ubiquitin-conjugating activity
T Takeuchi et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2005)
Mass spectrometry-based proteomics turns quantitative
SE Ong et al.
NATURE CHEMICAL BIOLOGY (2005)
Ubiquitin-binding domains
L Hicke et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)
Human ISG15 conjugation targets both IFN-induced and constitutively expressed proteins functioning in diverse cellular pathways
C Zhao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
GPS: a comprehensive www server for phosphorylation sites prediction
Y Xue et al.
NUCLEIC ACIDS RESEARCH (2005)
SUMO modification of the ubiquitin-conjugating enzyme E2-25K
A Pichler et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2005)
The ABC's (and XYZ's) of peptide sequencing
H Steen et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2004)
Specific and covalent targeting of conjugating and deconjugating enzymes of ubiquitin-like proteins
J Hemelaar et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
Proteasome-mediated degradation of p21 via N-terminal ubiquitinylation
J Bloom et al.
CELL (2003)
A proteomics approach to understanding protein ubiquitination
JM Peng et al.
NATURE BIOTECHNOLOGY (2003)
Tandem mass tags:: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
A Thompson et al.
ANALYTICAL CHEMISTRY (2003)
PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry
B Ma et al.
RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2003)
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
SE Ong et al.
MOLECULAR & CELLULAR PROTEOMICS (2002)
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