相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Validation and quality assessment of macromolecular structures using complex network analysis
Jure Praznikar et al.
SCIENTIFIC REPORTS (2019)
Evolutionary-Conserved Allosteric Properties of Three Neuronal Calcium Sensor Proteins
Valerio Marino et al.
FRONTIERS IN MOLECULAR NEUROSCIENCE (2019)
Functional characterization of 3D protein structures informed by human genetic diversity
Michael Hicks et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Conformational Switch Driven Membrane Pore Formation by Mycobacterium Secretory Protein MPT63 Induces Macrophage Cell Death
Achinta Sannigrahi et al.
ACS CHEMICAL BIOLOGY (2019)
y Consistency and differences between centrality measures across distinct classes of networks
Stuart Oldham et al.
PLOS ONE (2019)
Centrality in Complex Networks with Overlapping Community Structure
Zakariya Ghalmane et al.
SCIENTIFIC REPORTS (2019)
Effects of Membrane and Biological Target on the Structural and Allosteric Properties of Recoverin: A Computational Approach
Alberto Borsatto et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
Regulatory-Mechanics of Constitutive Androstane Receptors: Basal and Ligand-Directed Actions
Bill Pham et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2019)
Effector-Binding-Directed Dimerization and Dynamic Communication between Allosteric Sites of Ribonucleotide Reductase
Bill Pham et al.
BIOCHEMISTRY (2019)
Constitutive Androstane Receptor 1 is Constitutively Bound to Chromatin and 'Primed' for Transactivation in Hepatocytes
Michael McMahon et al.
MOLECULAR PHARMACOLOGY (2019)
Comparative Exploratory Analysis of Intrinsically Disordered Protein Dynamics Using Machine Learning and Network Analytic Methods
Gianmarc Grazioli et al.
FRONTIERS IN MOLECULAR BIOSCIENCES (2019)
Dynamic properties of oligomers that characterize low-frequency normal modes
Hiroshi Wako et al.
BIOPHYSICS AND PHYSICOBIOLOGY (2019)
Applying graph theory to protein structures: an Atlas of coiled coils
Jack W. Heal et al.
BIOINFORMATICS (2018)
Elucidating Allosteric Communications in Proteins with Difference Contact Network Analysis
Xin-Qiu Yao et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2018)
Characterizing protein conformations by correlation analysis of coarse-grained contact matrices
Richard J. Lindsay et al.
JOURNAL OF CHEMICAL PHYSICS (2018)
CAMERRA: An analysis tool for the computation of conformational dynamics by evaluating residue-residue associations
Quentin R. Johnson et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2018)
Characterizing the 3D structure and dynamics of chromosomes and proteins in a common contact matrix framework
Richard J. Lindsay et al.
NUCLEIC ACIDS RESEARCH (2018)
Folding, Assembly, and Persistence: The Essential Nature and Origins of Biopolymers
Calvin M. Runnels et al.
JOURNAL OF MOLECULAR EVOLUTION (2018)
Eigenvector centrality for characterization of protein allosteric pathways
Christian F. A. Negre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
The adaptive nature of protein residue networks
Wael I. Karain et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2017)
A control analysis perspective on Katz centrality
Kieran J. Sharkey
SCIENTIFIC REPORTS (2017)
How Ligands Illuminate GPCR Molecular Pharmacology
Daniel Wacker et al.
CELL (2017)
NAPS: Network Analysis of Protein Structures
Broto Chakrabarty et al.
NUCLEIC ACIDS RESEARCH (2016)
Dynamical network of residue-residue contacts reveals coupled allosteric effects in recognition, catalysis, and mutation
Urmi Doshi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Network representation of protein interactions: Theory of graph description and analysis
Dennis Kurzbach
PROTEIN SCIENCE (2016)
Residue Geometry Networks: A Rigidity-Based Approach to the Amino Acid Network and Evolutionary Rate Analysis
Alexander S. Fokas et al.
SCIENTIFIC REPORTS (2016)
Investigation of Structural Dynamics of Enzymes and Protonation States of Substrates Using Computational Tools
Chia-en A. Chang et al.
CATALYSTS (2016)
Evolution of Centrality Measurements for the Detection of Essential Proteins in Biological Networks
Mahdi Jalili et al.
FRONTIERS IN PHYSIOLOGY (2016)
Biophysical and computational methods to analyze amino acid interaction networks in proteins
Kathleen F. O'Rourke et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2016)
A better prediction of conformational changes of proteins using minimally connected network models
Cyrus Ahmadi Toussi et al.
PHYSICAL BIOLOGY (2016)
Protein contact network topology: a natural language for allostery
Luisa Di Paola et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2015)
Molecular Dynamics Simulations and Structural Network Analysis of c-Abl and c-Src Kinase Core Proteins: Capturing Allosteric Mechanisms and Communication Pathways from Residue Centrality
Amanda Tse et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2015)
Structural insights into μ-opioid receptor activation
Weijiao Huang et al.
NATURE (2015)
The construction of an amino acid network for understanding protein structure and function
Wenying Yan et al.
AMINO ACIDS (2014)
PyInteraph: A Framework for the Analysis of Interaction Networks in Structural Ensembles of Proteins
Matteo Tiberti et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2014)
Protein Contact Networks: An Emerging Paradigm in Chemistry
L. Di Paola et al.
CHEMICAL REVIEWS (2013)
Simple Topological Features Reflect Dynamics and Modularity in Protein Interaction Networks
Yuri Pritykin et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
SMALL WORLD NETWORK STRATEGIES FOR STUDYING PROTEIN STRUCTURES AND BINDING
Neil R. Taylor
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2013)
Network-Based Models as Tools Hinting at Nonevident Protein Functionality
Canan Atilgan et al.
ANNUAL REVIEW OF BIOPHYSICS, VOL 41 (2012)
Protein Conformational Switches: From Nature to Design
Jeung-Hoi Ha et al.
CHEMISTRY-A EUROPEAN JOURNAL (2012)
A Comparison of Multiscale Methods for the Analysis of Molecular Dynamics Simulations
Noah C. Benson et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
Allosteric networks in thrombin distinguish procoagulant vs. anticoagulant activities
Paul M. Gasper et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Intra and Inter-Molecular Communications Through Protein Structure Network
Saraswathi Vishveshwara et al.
CURRENT PROTEIN & PEPTIDE SCIENCE (2009)
Dynamical networks in tRNA: protein complexes
Anurag Sethi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Proteins As Networks: Usefulness of Graph Theory in Protein Science
Alessandro Giuliani et al.
CURRENT PROTEIN & PEPTIDE SCIENCE (2008)
Contact rearrangements form coupled networks from local motions in allosteric proteins
Michael D. Daily et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Network analysis of protein dynamics
Csaba Boede et al.
FEBS LETTERS (2007)
How accurate and statistically robust are catalytic site predictions based on closeness centrality?
Eric Chea et al.
BMC BIOINFORMATICS (2007)
Regulation of androgen receptor activity by tyrosine phosphorylation
Zhiyong Guo et al.
CANCER CELL (2006)
Sequence determinants of a conformational switch in a protein structure
TA Anderson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
A network representation of protein structures: Implications for protein stability
KV Brinda et al.
BIOPHYSICAL JOURNAL (2005)
Improved prediction of critical residues for protein function based on network and phylogenetic analyses
B Thibert et al.
BMC BIOINFORMATICS (2005)
Network analysis of protein structures identifies functional residues
G Amitai et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Topological determinants of protein folding
NV Dokholyan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
分享论文
