相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification
Pieter Moris et al.
BRIEFINGS IN BIOINFORMATICS (2021)
Machine Learning for Biologics: Opportunities for Protein Engineering, Developability, and Formulation
Harini Narayanan et al.
TRENDS IN PHARMACOLOGICAL SCIENCES (2021)
DeepTCR is a deep learning framework for revealing sequence concepts within T-cell repertoires
John-William Sidhom et al.
NATURE COMMUNICATIONS (2021)
Machine Learning Analysis of Naive B-Cell Receptor Repertoires Stratifies Celiac Disease Patients and Controls
Or Shemesh et al.
FRONTIERS IN IMMUNOLOGY (2021)
Animal Immunization, in Vitro Display Technologies, and Machine Learning for Antibody Discovery
Andreas H. Laustsen et al.
TRENDS IN BIOTECHNOLOGY (2021)
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding
Rahmad Akbar et al.
CELL REPORTS (2021)
Predicting recognition between T cell receptors and epitopes with TCRGP
Emmi Jokinen et al.
PLOS COMPUTATIONAL BIOLOGY (2021)
The Future of Blood Testing Is the Immunome
Ramy A. Arnaout et al.
FRONTIERS IN IMMUNOLOGY (2021)
Optimization of therapeutic antibodies by predicting antigen specificity from antibody sequence via deep learning
Derek M. Mason et al.
NATURE BIOMEDICAL ENGINEERING (2021)
SIMON: Open-Source Knowledge Discovery Platform
Adriana Tomic et al.
PATTERNS (2021)
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium
Dmitry Bagaev et al.
NUCLEIC ACIDS RESEARCH (2020)
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking
Cedric R. Weber et al.
BIOINFORMATICS (2020)
Analyzing the Mycobacterium tuberculosis immune response by T-cell receptor clustering with GLIPH2 and genome-wide antigen screening
Huang Huang et al.
NATURE BIOTECHNOLOGY (2020)
T cell receptor sequence clustering and antigen specificity
Milena Vujovic et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)
Predicting antigen specificity of single T cells based onTCR CDR3 regions
David S. Fischer et al.
MOLECULAR SYSTEMS BIOLOGY (2020)
Deep learning for genomics using Janggu
Wolfgang Kopp et al.
NATURE COMMUNICATIONS (2020)
De novo prediction of cancer-associated T cell receptors for noninvasive cancer detection
Daria Beshnova et al.
SCIENCE TRANSLATIONAL MEDICINE (2020)
Genetic and environmental determinants of human TCR repertoire diversity
Chirag Krishna et al.
IMMUNITY & AGEING (2020)
Prediction of Specific TCR-Peptide Binding From Large Dictionaries of TCR-Peptide Pairs
Ido Springer et al.
FRONTIERS IN IMMUNOLOGY (2020)
Immune Literacy: Reading, Writing, and Editing Adaptive Immunity
Lucia Csepregi et al.
ISCIENCE (2020)
Mining adaptive immune receptor repertoires for biological and clinical information using machine learning
Victor Greiff et al.
CURRENT OPINION IN SYSTEMS BIOLOGY (2020)
The adaptive immune receptor repertoire community as a model for FAIR stewardship of big immunology data
Jamie K. Scott et al.
CURRENT OPINION IN SYSTEMS BIOLOGY (2020)
Human thymic T cell repertoire is imprinted with strong convergence to shared sequences
Nelli Heikkila et al.
MOLECULAR IMMUNOLOGY (2020)
The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons
Scott Christley et al.
FRONTIERS IN BIG DATA (2020)
A Review of Deep Learning Methods for Antibodies
Jordan Graves et al.
ANTIBODIES (2020)
Selene: a PyTorch-based deep learning library for sequence data
Kathleen M. Chen et al.
NATURE METHODS (2019)
T cell receptor β repertoires as novel diagnostic markers for systemic lupus erythematosus and rheumatoid arthritis
Xiao Liu et al.
ANNALS OF THE RHEUMATIC DISEASES (2019)
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
Siegfried Gessulat et al.
NATURE METHODS (2019)
Applications of machine learning in drug discovery and development
Jessica Vamathevan et al.
NATURE REVIEWS DRUG DISCOVERY (2019)
Deep learning: new computational modelling techniques for genomics
Gokcen Eraslan et al.
NATURE REVIEWS GENETICS (2019)
Deep generative models for T cell receptor protein sequences
Kristian Davidsen et al.
ELIFE (2019)
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs
Zachary Sethna et al.
BIOINFORMATICS (2019)
Biophysicochemical Motifs in T-cell Receptor Sequences Distinguish Repertoires from Tumor-Infiltrating Lymphocyte and Adjacent Healthy Tissue
Jared Ostmeyer et al.
CANCER RESEARCH (2019)
Commonality despite exceptional diversity in the baseline human antibody repertoire
Bryan Briney et al.
NATURE (2019)
A guide to deep learning in healthcare
Andre Esteva et al.
NATURE MEDICINE (2019)
Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires
Alex J. Brown et al.
MOLECULAR SYSTEMS DESIGN & ENGINEERING (2019)
iReceptor: A platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories
Brian D. Corrie et al.
IMMUNOLOGICAL REVIEWS (2018)
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
Enis Afgan et al.
NUCLEIC ACIDS RESEARCH (2018)
Sex bias in MHC I-associated shaping of the adaptive immune system
Tilman Schneider-Hohendorf et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
MoleculeNet: a benchmark for molecular machine learning
Zhenqin Wu et al.
CHEMICAL SCIENCE (2018)
High-throughput immune repertoire analysis with IGoR
Quentin Marcou et al.
NATURE COMMUNICATIONS (2018)
Deep learning in biomedicine
Michael Wainberg et al.
NATURE BIOTECHNOLOGY (2018)
Human T cell receptor occurrence patterns encode immune history, genetic background, an receptor specificity
William S. Dewitt et al.
ELIFE (2018)
AIRR Community Standardized Representations for Annotated Immune Repertoires
Jason Anthony Vander Heiden et al.
FRONTIERS IN IMMUNOLOGY (2018)
Learning the High-Dimensional Immunogenomic Features That Predict Public and Private Antibody Repertoires
Victor Greiff et al.
JOURNAL OF IMMUNOLOGY (2017)
Quantifiable predictive features define epitope-specific T cell receptor repertoires
Pradyot Dash et al.
NATURE (2017)
Identifying specificity groups in the T cell receptor repertoire
Jacob Glanville et al.
NATURE (2017)
Firmiana: towards a one-stop proteomic cloud platform for data processing and analysis
Jinwen Feng et al.
NATURE BIOTECHNOLOGY (2017)
Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire
Ryan O. Emerson et al.
NATURE GENETICS (2017)
Massively parallel digital transcriptional profiling of single cells
Grace X. Y. Zheng et al.
NATURE COMMUNICATIONS (2017)
Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data
Felix Breden et al.
FRONTIERS IN IMMUNOLOGY (2017)
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data
Florian Rubelt et al.
NATURE IMMUNOLOGY (2017)
How many TCR clonotypes does a body maintain?
Grant Lythe et al.
JOURNAL OF THEORETICAL BIOLOGY (2016)
FAIR principles for data stewardship
[Anonymous]
NATURE GENETICS (2016)
Causal inference and the data-fusion problem
Elias Bareinboim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
What does research reproducibility mean?
Steven N. Goodman et al.
SCIENCE TRANSLATIONAL MEDICINE (2016)
Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data
Namita T. Gupta et al.
BIOINFORMATICS (2015)
MiXCR: software for comprehensive adaptive immunity profiling
Dmitriy A. Bolotin et al.
NATURE METHODS (2015)
Practical guidelines for B-cell receptor repertoire sequencing analysis
Gur Yaari et al.
GENOME MEDICINE (2015)
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires
Jason A. Vander Heiden et al.
BIOINFORMATICS (2014)
Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence
Niclas Thomas et al.
BIOINFORMATICS (2014)
Age-Related Decrease in TCR Repertoire Diversity Measured with Deep and Normalized Sequence Profiling
Olga V. Britanova et al.
JOURNAL OF IMMUNOLOGY (2014)
The promise and challenge of high-throughput sequencing of the antibody repertoire
George Georgiou et al.
NATURE BIOTECHNOLOGY (2014)
Software with impact
[Anonymous]
NATURE METHODS (2014)
Tetramer-visualized gluten-specific CD4+T cells in blood as a potential diagnostic marker for coeliac disease without oral gluten challenge
Asbjorn Christophersen et al.
UNITED EUROPEAN GASTROENTEROLOGY JOURNAL (2014)
Convergent Antibody Signatures in Human Dengue
Poornima Parameswaran et al.
CELL HOST & MICROBE (2013)
分享论文
