相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Random forests for high-dimensional longitudinal data
Louis Capitaine et al.
STATISTICAL METHODS IN MEDICAL RESEARCH (2021)
Label or Concept - What is a Pathobiont?
Lara Jochum et al.
TRENDS IN MICROBIOLOGY (2020)
The GenusAlistipes: Gut Bacteria With Emerging Implications to Inflammation, Cancer, and Mental Health
Bianca J. Parker et al.
FRONTIERS IN IMMUNOLOGY (2020)
Faecal bacterial and short-chain fatty acids signature in hypercholesterolemia
A. B. Granado-Serrano et al.
SCIENTIFIC REPORTS (2019)
Tu1792 – Gut Microbiome Diversity in Acute Severe Colitis is Distinct from Mild to Moderate Ulcerative Colitis
Saurabh Kedia et al.
GASTROENTEROLOGY (2019)
Alzheimer's Disease Microbiome Is Associated with Dysregulation of the Anti-Inflammatory P-Glycoprotein Pathway
John P. Haran et al.
MBIO (2019)
Butyrate Protects Mice from Clostridium difficile-Induced Colitis through an HIF-1-Dependent Mechanism
Jose Luis Fachi et al.
CELL REPORTS (2019)
The Proton Pump Inhibitor Omeprazole Does Not Promote Clostridioides difficile Colonization in a Murine Model
Sarah Tomkovich et al.
MSPHERE (2019)
Parabacteroides distasonis Alleviates Obesity and Metabolic Dysfunctions via Production of Succinate and Secondary Bile Acids
Kai Wang et al.
CELL REPORTS (2019)
The nursing home elder microbiome stability and associations with age, frailty, nutrition and physical location
John P. Haran et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2018)
Clostridium difficile - From Colonization to Infection
Holger Schaeffler et al.
FRONTIERS IN MICROBIOLOGY (2018)
Species-level functional profiling of metagenomes and metatranscriptomes
Eric A. Franzosa et al.
NATURE METHODS (2018)
Systematic review: human gut dysbiosis induced by non-antibiotic prescription medications
Q. Le Bastard et al.
ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2018)
Toxigenic Clostridium difficile colonization among hospitalised adults; risk factors and impact on survival
Laura Behar et al.
JOURNAL OF INFECTION (2017)
Proton pump inhibitors therapy and risk of Clostridium difficile infection: Systematic review and meta-analysis
Anca Trifan et al.
WORLD JOURNAL OF GASTROENTEROLOGY (2017)
A human stool-derived Bilophila wadsworthia strain caused systemic inflammation in specific-pathogen-free mice
Zhou Feng et al.
GUT PATHOGENS (2017)
Proteobacteria: A Common Factor in Human Diseases
G. Rizzatti et al.
BIOMED RESEARCH INTERNATIONAL (2017)
What is polypharmacy? A systematic review of definitions
Nashwa Masnoon et al.
BMC GERIATRICS (2017)
Functional Characterization of Novel Faecalibacterium prausnitzii Strains Isolated from Healthy Volunteers: A Step Forward in the Use of F. prausnitzii as a Next-Generation Probiotic
Rebeca Martin et al.
FRONTIERS IN MICROBIOLOGY (2017)
Total Lipopolysaccharide from the Human Gut Microbiome Silences Toll-Like Receptor Signaling
Eva d'Hennezel et al.
MSYSTEMS (2017)
Gut microbiota composition is associated with polypharmacy in elderly hospitalized patients
Andrea Ticinesi et al.
SCIENTIFIC REPORTS (2017)
Nutrition and the gut microbiome in the elderly
Nuria Salazar et al.
GUT MICROBES (2017)
Survival of the Fittest: How Bacterial Pathogens Utilize Bile To Enhance Infection
Jeticia R. Sistrunk et al.
CLINICAL MICROBIOLOGY REVIEWS (2016)
Reduced Abundance of Butyrate-Producing Bacteria Species in the Fecal Microbial Community in Crohn's Disease
Kenichiro Takahashi et al.
DIGESTION (2016)
Signatures of early frailty in the gut microbiota
Matt Jackson et al.
GENOME MEDICINE (2016)
Bifidobacteria and Butyrate-Producing Colon Bacteria: Importance and Strategies for Their Stimulation in the Human Gut
Audrey Riviere et al.
FRONTIERS IN MICROBIOLOGY (2016)
The Gut Microbiota in Immune-Mediated Inflammatory Diseases
Jessica D. Forbes et al.
FRONTIERS IN MICROBIOLOGY (2016)
Dentition, nutritional status and adequacy of dietary intake among older residents in assisted living facilities
Riitta K. T. Saarela et al.
GERODONTOLOGY (2016)
Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study
Christian Milani et al.
SCIENTIFIC REPORTS (2016)
Proton Pump Inhibitors Alter Specific Taxa in the Human Gastrointestinal Microbiome: A Crossover Trial
Daniel E. Freedberg et al.
GASTROENTEROLOGY (2015)
Environmental Interventions to Control Clostridium difficile
Vivian G. Loo
INFECTIOUS DISEASE CLINICS OF NORTH AMERICA (2015)
Why Summary Comorbidity Measures Such As the Charlson Comorbidity Index and Elixhauser Score Work
Steven R. Austin et al.
MEDICAL CARE (2015)
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
Duy Tin Truong et al.
NATURE METHODS (2015)
Burden of Clostridium difficile Infection in the United States
Fernanda C. Lessa et al.
NEW ENGLAND JOURNAL OF MEDICINE (2015)
The Importance of Colonization with Clostridium difficile on Infection and Transmission
Daniel J. Morgan et al.
CURRENT INFECTIOUS DISEASE REPORTS (2015)
Clinical and Microbiological Characteristics of Eggerthella lenta Bacteremia
B. J. Gardiner et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2015)
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
Charlie G. Buffie et al.
NATURE (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Defining dysbiosis and its influence on host immunity and disease
Charisse Petersen et al.
CELLULAR MICROBIOLOGY (2014)
Clostridium difficile Infection in the Elderly
Jonathan M. Keller et al.
CLINICS IN GERIATRIC MEDICINE (2014)
Mixed-effects random forest for clustered data
Ahlem Hajjem et al.
JOURNAL OF STATISTICAL COMPUTATION AND SIMULATION (2014)
Microbiome Data Distinguish Patients with Clostridium difficile Infection and Non-C. difficile-Associated Diarrhea from Healthy Controls
Alyxandria M. Schubert et al.
MBIO (2014)
Bacteroides dorei dominates gut microbiome prior to autoimnnunity in Finnish children at high risk for type 1 diabetes
Austin G. Davis-Richardson et al.
FRONTIERS IN MICROBIOLOGY (2014)
Species and genus level resolution analysis of gut microbiota in Clostridium difficile patients following fecal microbiota transplantation
Vijay Shankar et al.
MICROBIOME (2014)
Epidemiology of Clostridium difficile-Associated Disease (CDAD): A Shift from Hospital-Acquired Infection to Long-Term Care Facility-Based Infection
Shashank Garg et al.
DIGESTIVE DISEASES AND SCIENCES (2013)
Intestinal Dysbiosis and Depletion of Butyrogenic Bacteria in Clostridium difficile Infection and Nosocomial Diarrhea
Vijay C. Antharam et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2013)
Gut Microbiota Patterns Associated with Colonization of Different Clostridium difficile Ribotypes
Jure Skraban et al.
PLOS ONE (2013)
Asymptomatic Clostridium difficile Colonisation and Onward Transmission
David W. Eyre et al.
PLOS ONE (2013)
Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T))
Konstantinos Mavromatis et al.
STANDARDS IN GENOMIC SCIENCES (2013)
Bile resistance mechanisms in Lactobacillus and Bifidobacterium
Lorena Ruiz et al.
FRONTIERS IN MICROBIOLOGY (2013)
Reductions in intestinal Clostridiales precede the development of nosocomial Clostridium difficile infection
Caroline Vincent et al.
MICROBIOME (2013)
The Roles of Clostridium difficile and Norovirus Among Gastroenteritis-Associated Deaths in the United States, 1999-2007
Aron J. Hall et al.
CLINICAL INFECTIOUS DISEASES (2012)
Profound Alterations of Intestinal Microbiota following a Single Dose of Clindamycin Results in Sustained Susceptibility to Clostridium difficile-Induced Colitis
Charlie G. Buffie et al.
INFECTION AND IMMUNITY (2012)
Clostridium difficile Carriage in Elderly Subjects and Associated Changes in the Intestinal Microbiota
Mary C. Rea et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2012)
Detection of Clostridium difficile toxin A/B genes by multiplex real-time PCR for the diagnosis of C. difficile infection
Heejung Kim et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2012)
Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice
Suzanne Devkota et al.
NATURE (2012)
Gut microbiota composition correlates with diet and health in the elderly
Marcus J. Claesson et al.
NATURE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Chapter 12: Human Microbiome Analysis
Xochitl C. Morgan et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
Xochitl C. Morgan et al.
GENOME BIOLOGY (2012)
Updating and Validating the Charlson Comorbidity Index and Score for Risk Adjustment in Hospital Discharge Abstracts Using Data From 6 Countries
Hude Quan et al.
AMERICAN JOURNAL OF EPIDEMIOLOGY (2011)
Clostridium difficile Infection in a Long-Term Care Facility: Hospital-Associated Illness Compared with Long-Term Care-Associated Illness
Jong Hun Kim et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2011)
The anxiolytic effect of Bifidobacterium longum NCC3001 involves vagal pathways for gut-brain communication
P. Bercik et al.
NEUROGASTROENTEROLOGY AND MOTILITY (2011)
Host and Pathogen Factors for Clostridium difficile Infection and Colonization
Vivian G. Loo et al.
NEW ENGLAND JOURNAL OF MEDICINE (2011)
Proton Pump Inhibitors and Risk for Recurrent Clostridium difficile Infection
Amy Linsky et al.
ARCHIVES OF INTERNAL MEDICINE (2010)
Permutation importance: a corrected feature importance measure
Andre Altmann et al.
BIOINFORMATICS (2010)
Proton pump inhibitors as a risk factor for recurrence of Clostridium-difficile-associated diarrhea
Ji Won Kim et al.
WORLD JOURNAL OF GASTROENTEROLOGY (2010)
Clostridium difficile Infection in Ohio Hospitals and Nursing Homes During 2006
Robert J. Campbell et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2009)
Bile salts and glycine as cogerminants for Clostridium difficile spores
Joseph A. Sorg et al.
JOURNAL OF BACTERIOLOGY (2008)
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
Harry Sokol et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Asymptomatic carriers are a potential source for transmission of epidemic and nonepidemic Clostridium difficile strains among long-term care facility residents
Michelle M. Riggs et al.
CLINICAL INFECTIOUS DISEASES (2007)
Bacteroides: the good, the bad, and the nitty-gritty
Hannah M. Wexler
CLINICAL MICROBIOLOGY REVIEWS (2007)
A new brief instrument for assessing decisional capacity for clinical research
Dilip V. Jeste et al.
ARCHIVES OF GENERAL PSYCHIATRY (2007)
A global clinical measure of fitness and frailty in elderly people
K Rockwood et al.
CANADIAN MEDICAL ASSOCIATION JOURNAL (2005)
Anaerofustis stercorihominis gen. nov., sp nov., from human feces
SM Finegold et al.
ANAEROBE (2004)
Diarrhea in elderly patients due to Clostridium difficile associated with Salmonella and Shigella infection
J Grinblat et al.
ARCHIVES OF GERONTOLOGY AND GERIATRICS (2004)
Changes in predominant bacterial populations in human faeces with age and with Clostridium difficile infection
MJ Hopkins et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2002)
Screening for undernutrition in geriatric practice:: Developing the Short-Form Mini-Nutritional Assessment (MNA-SF)
LZ Rubenstein et al.
JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES (2001)