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Nadrian C. Seeman et al.
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Jejoong Yoo et al.
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Stefanos K. Nomidis et al.
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Alberto Marin-Gonzalez et al.
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Ning Ma et al.
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Anirban Samanta et al.
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Ye Tian et al.
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Stefan-S. Jester et al.
ACCOUNTS OF CHEMICAL RESEARCH (2014)
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Leo Y. T. Chou et al.
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Tung T. Le et al.
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Alexander Vologodskii et al.
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Jonathan S. Mitchell et al.
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Johann Elbaz et al.
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Justin Spiriti et al.
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Jonathan M. Fogg et al.
QUARTERLY REVIEWS OF BIOPHYSICS (2012)
Extreme Bendability of DNA Less than 100 Base Pairs Long Revealed by Single-Molecule Cyclization
Reza Vafabakhsh et al.
SCIENCE (2012)
Variety of genomic DNA patterns for nucleosome positioning
Ilya Ioshikhes et al.
GENOME RESEARCH (2011)
Construction of a Structurally Defined Double-Stranded DNA Catenane
Thorsten L. Schmidt et al.
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J. S. Mitchell et al.
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A proximity-based programmable DNA nanoscale assembly line
Hongzhou Gu et al.
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Davide Demurtas et al.
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Graham L. Randall et al.
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Local and global effects of strong DNA bending induced during molecular dynamics simulations
Jeremy Curuksu et al.
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R. Lavery et al.
NUCLEIC ACIDS RESEARCH (2009)
Towards a molecular dynamics consensus view of B-DNA flexibility
Alberto Perez et al.
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Kinking the double helix by bending deformation
Quan Du et al.
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Sarah A. Harris et al.
NUCLEIC ACIDS RESEARCH (2008)
Refinenement of the AMBER force field for nucleic acids:: Improving the description of α/γ conformers
Alberto Perez et al.
BIOPHYSICAL JOURNAL (2007)
Biological consequences of tightly bent DNA: The other life of a macromolecular celebrity
Hernan G. Garcia et al.
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Kinking occurs during molecular dynamics simulations of small DNA minicircles
Filip Lankas et al.
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A genomic code for nucleosome positioning
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Folding DNA to create nanoscale shapes and patterns
PWK Rothemund
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Cyclization of short DNA fragments and bending fluctuations of the double helix
Q Du et al.
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Nanostructures in biodiagnostics
NL Rosi et al.
CHEMICAL REVIEWS (2005)
Stacked-unstacked equilibrium at the nick site of DNA
E Protozanova et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Localized single-stranded bubble mechanism for cyclization of short double helix DNA
J Yan et al.
PHYSICAL REVIEW LETTERS (2004)
Spontaneous sharp bending of double-stranded DNA
TE Cloutier et al.
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TJ Richmond et al.
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H Yan et al.
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Role of DNA sequence in nucleosome stability and dynamics
J Widom
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A DNA-fuelled molecular machine made of DNA
B Yurke et al.
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