相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States
Maria Hoffmann et al.
JOURNAL OF INFECTIOUS DISEASES (2016)
Application of Metagenomic Sequencing to Food Safety: Detection of Shiga Toxin-Producing Escherichia coli on Fresh Bagged Spinach
Susan R. Leonard et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Accelerating Sample Preparation Through Enzyme-Assisted Microfiltration of Salmonella in Chicken Extract
Hunter B. Vibbert et al.
BIOTECHNOLOGY PROGRESS (2015)
Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing
Karen G. Jarvis et al.
BMC MICROBIOLOGY (2015)
A multi-country Salmonella Enteritidis phage type 14b outbreak associated with eggs from a German producer: 'near real-time' application of whole genome sequencing and food chain investigations, United Kingdom, May to September 2014
T. Inns et al.
EUROSURVEILLANCE (2015)
WGS accurately predicts antimicrobial resistance in Escherichia coli
Gregory H. Tyson et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2015)
Salmonella Serotype Determination Utilizing High-Throughput Genome Sequencing Data
Shaokang Zhang et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2015)
Interlaboratory Validation for a Real-Time PCR Salmonella Detection Method Using the ABI 7500 FAST Real-Time PCR System
Chorng-Ming Cheng et al.
JOURNAL OF FOOD PROTECTION (2015)
Ecological prevalence, genetic diversity, and epidemiological aspects of Salmonella isolated from tomato agricultural regions of the Virginia Eastern Shore
Rebecca L. Bell et al.
Frontiers in Microbiology (2015)
The vocabulary of microbiome research: a proposal
Julian R. Marchesi et al.
MICROBIOME (2015)
Emerging Perspectives on the Natural Microbiome of Fresh Produce Vegetables
Colin R. Jackson et al.
AGRICULTURE-BASEL (2015)
Platform for Identification of Salmonella Serovar Differentiating Bacterial Proteins by Top-Down Mass Spectrometry: S. Typhimurium vs S. Heidelberg
Melinda A. McFarland et al.
ANALYTICAL CHEMISTRY (2014)
Nano/Micro and Spectroscopic Approaches to Food Pathogen Detection
Il-Hoon Cho et al.
ANNUAL REVIEW OF ANALYTICAL CHEMISTRY, VOL 7 (2014)
In Situ Evaluation of Paenibacillus alvei in Reducing Carriage of Salmonella enterica Serovar Newport on Whole Tomato Plants
Sarah Allard et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
Phagomagnetic immunoassay for the rapid detection of Salmonella
Tamara Laube et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)
A multi-country outbreak of Salmonella Newport gastroenteritis in Europe associated with watermelon from Brazil, confirmed by whole genome sequencing: October 2011 to January 2012
L. Byrne et al.
EUROSURVEILLANCE (2014)
Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer
Emma L. Doughty et al.
PEERJ (2014)
Application of DNA Aptamers and Quantum Dots to Lateral Flow Test Strips for Detection of Foodborne Pathogens with Improved Sensitivity versus Colloidal Gold
John G. Bruno
PATHOGENS (2014)
Rapid Sample Processing for Detection of Food-Borne Pathogens via Cross-Flow Microfiltration
Xuan Li et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)
Andrea R. Ottesen et al.
BMC MICROBIOLOGY (2013)
Development of a sensitive and specific qPCR assay in conjunction with propidium monoazide for enhanced detection of live Salmonella spp. in food
Baoguang Li et al.
BMC MICROBIOLOGY (2013)
Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry: a Fundamental Shift in the Routine Practice of Clinical Microbiology
Andrew E. Clark et al.
CLINICAL MICROBIOLOGY REVIEWS (2013)
A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4
Nicholas J. Loman et al.
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2013)
Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing
Ea Zankari et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2013)
Phylogenetics and Differentiation of Salmonella Newport Lineages by Whole Genome Sequencing
Guojie Cao et al.
PLOS ONE (2013)
On the Evolutionary History, Population Genetics and Diversity among Isolates of Salmonella Enteritidis PFGE Pattern JEGX01.0004
Marc W. Allard et al.
PLOS ONE (2013)
Co-Enriching Microflora Associated with Culture Based Methods to Detect Salmonella from Tomato Phyllosphere
Andrea R. Ottesen et al.
PLOS ONE (2013)
Attribution of Foodborne Illnesses, Hospitalizations, and Deaths to Food Commodities by using Outbreak Data, United States, 1998-2008
John A. Painter et al.
EMERGING INFECTIOUS DISEASES (2013)
High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach
Marc W. Allard et al.
BMC GENOMICS (2012)
Characterization of microflora in Latin-style cheeses by next-generation sequencing technology
Tina S. Lusk et al.
BMC MICROBIOLOGY (2012)
Bio-capture of S. Typhimurium from surface water by aptamer for culture-free quantification
Gulshan Singh et al.
ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY (2012)
Rapid detection of Salmonella sp by means of a combination of selective enrichment broth and MALDI-TOF MS
K. Sparbier et al.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2012)
Development and evaluation of a multiplex real-time PCR (qPCR) assay targeting ttrRSBCA locus and invA gene for accurate detection of Salmonella spp. in fresh produce and eggs
Narjol Gonzalez-Escalona et al.
FOOD RESEARCH INTERNATIONAL (2012)
Comparison of microbial communities in marinated and unmarinated broiler meat by metagenomics
T. T. Nieminen et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
Comparison of the Microflex LT and Vitek MS Systems for Routine Identification of Bacteria by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Delphine Martiny et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2012)
Selective Enrichment Media Bias the Types of Salmonella enterica Strains Isolated from Mixed Strain Cultures and Complex Enrichment Broths
Lisa Gorski
PLOS ONE (2012)
Rapid Discrimination of Salmonella enterica Serovar Typhi from Other Serovars by MALDI-TOF Mass Spectrometry
Martin Kuhns et al.
PLOS ONE (2012)
Microbial Metagenomics: Beyond the Genome
Jack A. Gilbert et al.
ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 (2011)
A Whole-Genome Single Nucleotide Polymorphism-Based Approach To Trace and Identify Outbreaks Linked to a Common Salmonella enterica subsp enterica Serovar Montevideo Pulsed-Field Gel Electrophoresis Type
Henk C. den Bakker et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Rapid Screening of Epidemiologically Important Salmonella enterica subsp enterica Serovars by Whole-Cell Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Ralf Dieckmann et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Metagenomic Analysis of Kimchi, a Traditional Korean Fermented Food
Ji Young Jung et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Identification of Environmental Reservoirs of Nontyphoidal Salmonellosis: Aptamer-Assisted Bioconcentration and Subsequent Detection of Salmonella Typhimurium by Quantitative Polymerase Chain Reaction
Anurag Jyoti et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2011)
Recent advances in quantitative PCR (qPCR) applications in food microbiology
Florence Postollec et al.
FOOD MICROBIOLOGY (2011)
Antimicrobial Activity of Plant Extracts Against Salmonella Typhimurium, Escherichia coli O157:H7, and Listeria monocytogenes on Fresh Lettuce
Sung-Youn Kim et al.
JOURNAL OF FOOD SCIENCE (2011)
Salmonella and produce Survival in the plant environment and implications in food safety
Marianne K. Fatica et al.
VIRULENCE (2011)
Foodborne Illness Acquired in the United States-Major Pathogens
Elaine Scallan et al.
EMERGING INFECTIOUS DISEASES (2011)
A real-time PCR method for the detection of Salmonella enterica from food using a target sequence identified by comparative genomic analysis
Jing Chen et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2010)
Comparison of MALDI-TOF/MS and LC-QTOF/MS methods for the identification of enteric bacteria
Tiffany M. Mott et al.
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY (2010)
Effect of Enrichment Medium on Real-Time Detection of Salmonella enterica from Lettuce and Tomato Enrichment Cultures
Lisa Gorski et al.
JOURNAL OF FOOD PROTECTION (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Detection of Live Salmonella sp Cells in Produce by a TaqMan-Based Quantitative Reverse Transcriptase Real-Time PCR Targeting invA mRNA
Narjol Gonzalez-Escalona et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
A Rapid and Simple DNA Extraction Procedure to Detect Salmonella spp. and Listeria monocytogenes from Fresh Produce Using Real-time PCR
Trina Chua et al.
FOOD ANALYTICAL METHODS (2009)
An Accelerated Method for Isolation of Salmonella enterica Serotype Typhimurium from Artificially Contaminated Foods, Using a Short Preenrichment, Immunomagnetic Separation, and Xylose-Lysine-Desoxycholate Agar (61X Method)
Aparna Tatavarthy et al.
JOURNAL OF FOOD PROTECTION (2009)
Do Microbial Interactions and Cultivation Media Decrease the Accuracy of Salmonella Surveillance Systems and Outbreak Investigations?
Randall S. Singer et al.
JOURNAL OF FOOD PROTECTION (2009)
Studying bacterial infections through culture-independent approaches
Geraint B. Rogers et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2009)
Selection, characterization, and application of DNA aptamers for the capture and detection of Salmonella enterica serovars
Raghavendra Joshi et al.
MOLECULAR AND CELLULAR PROBES (2009)
Rapid Classification and Identification of Salmonellae at the Species and Subspecies Levels by Whole-Cell Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Ralf Dieckmann et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Molecular Phylogeny of the Salmonellae: Relationships among Salmonella Species and Subspecies Determined from Four Housekeeping Genes and Evidence of Lateral Gene Transfer Events
J. R. McQuiston et al.
JOURNAL OF BACTERIOLOGY (2008)
Metagenomic analysis of human diarrhea: Viral detection and discovery
Stacy R. Finkbeiner et al.
PLOS PATHOGENS (2008)
Optimization of a 12-hour TaqMan PCR-based method for detection of Salmonella bacteria in meat
M. H. Josefsen et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Approaches for eliminating PCR inhibitors and designing PCR primers for the detection of phytopathogenic fungi
Zhonghua Ma et al.
CROP PROTECTION (2007)
The effect of pre-enrichment protocol on the sensitivity and specificity of PCR for detection of naturally contaminated Salmonella in raw poultry compared to conventional culture
M. S. Myint et al.
FOOD MICROBIOLOGY (2006)
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
T. Z. DeSantis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7 Salmonella, and Shigella for PulseNet
Efrain M. Ribot et al.
FOODBORNE PATHOGENS AND DISEASE (2006)
UniFrac: a new phylogenetic method for comparing microbial communities
C Lozupone et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
A top-down proteomics approach for differentiating thermal resistant strains of Enterobacter sakazakii
TL Williams et al.
PROTEOMICS (2005)
Bioinformatics for whole-genome shotgun sequencing of microbial communities
K Chen et al.
PLOS COMPUTATIONAL BIOLOGY (2005)
Bacterial analysis by MALDI-TOF mass spectrometry: An inter-lab oratory comparison
SC Wunschel et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2005)
Identification of a protein biomarker unique to the pandemic O3:K6 clone of Vibrio parahaemolyticus
TL Williams et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2004)
Diagnostic real-time PCR for detection of Salmonella in food
B Malorny et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Difference and consensus of whole cell Salmonella enterica subsp enterica serovars matrix-assisted laser desorption/ionization time-of-flight mass spectrometry spectra
RGK Leuschner et al.
LETTERS IN APPLIED MICROBIOLOGY (2004)
Experimental factors affecting the quality and reproducibility of MALDI TOF mass spectra obtained from whole bacteria cells
TL Williams et al.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2003)
Multicenter validation of the analytical accuracy of Salmonella PCR: towards an international standard
B Malorny et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Investigating the effects of protein patterns on microorganism identification by high-performance liquid chromatography-mass spectrometry and protein database searches
YP Ho et al.
JOURNAL OF CHROMATOGRAPHY A (2002)
Serotyping and ribotyping of Salmonella using restriction enzyme PvuII
JS Bailey et al.
JOURNAL OF FOOD PROTECTION (2002)
Characterization of intact microorganisms by MALDI mass spectrometry
C Fenselau et al.
MASS SPECTROMETRY REVIEWS (2001)
PCR detection of Salmonella enterica serotype Montevideo in and on raw tomatoes using primers derived from hilA
X Guo et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)
分享论文
