4.3 Article

Characterizing the oral and distal gut microbiota of the threatened southern sea otter (Enhydra lutris nereis) to enhance conservation practice

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biodiversity Conservation

Efficacy of a probiotic bacterium to treat bats affected by the disease white-nose syndrome

Tina L. Cheng et al.

JOURNAL OF APPLIED ECOLOGY (2017)

Article Multidisciplinary Sciences

Caterpillars lack a resident gut microbiome

Tobin J. Hammer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Microbiology

Towards a balanced view of the bacterial tree of life

Frederik Schulz et al.

MICROBIOME (2017)

Article Biochemistry & Molecular Biology

Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome

Natasha K. Dudek et al.

CURRENT BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Centrifuge: rapid and sensitive classification of metagenomic sequences

Daehwan Kim et al.

GENOME RESEARCH (2016)

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

Article Multidisciplinary Sciences

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

Elisabeth M. Bik et al.

NATURE COMMUNICATIONS (2016)

Article Multidisciplinary Sciences

VSEARCH: a versatile open source tool for metagenomics

Torbjorn Rognes et al.

Article Microbiology

Genomic comparison of chitinolytic enzyme systems from terrestrial and aquatic bacteria

Yani Bai et al.

ENVIRONMENTAL MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Temporal and spatial variation of the human microbiota during pregnancy

Daniel B. DiGiulio et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Review Multidisciplinary Sciences

Marine defaunation: Animal loss in the global ocean

Douglas J. McCauley et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores

Jon G. Sanders et al.

NATURE COMMUNICATIONS (2015)

Article Multidisciplinary Sciences

Anvi'o: an advanced analysis and visualization platformfor 'omics data

A. Murat Eren et al.

Article Biochemistry & Molecular Biology

Convergence of gut microbiomes in myrmecophagous mammals

Frederic Delsuc et al.

MOLECULAR ECOLOGY (2014)

Article Multidisciplinary Sciences

Diet rapidly and reproducibly alters the human gut microbiome

Lawrence A. David et al.

NATURE (2014)

Article Biochemistry & Molecular Biology

Ribosomal Database Project: data and tools for high throughput rRNA analysis

James R. Cole et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemical Research Methods

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

Paul J. McMurdie et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Multidisciplinary Sciences

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota

James H. Campbell et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Immunology

Microbiota-mediated colonization resistance against intestinal pathogens

Charlie G. Buffie et al.

NATURE REVIEWS IMMUNOLOGY (2013)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

IMG: the integrated microbial genomes database and comparative analysis system

Victor M. Markowitz et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

Bayesian community-wide culture-independent microbial source tracking

Dan Knights et al.

NATURE METHODS (2011)

Article Biochemistry & Molecular Biology

HMMER web server: interactive sequence similarity searching

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Environmental Sciences

Humpback whales harbour a combination of specific and variable skin bacteria

Amy Apprill et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2011)

Article Biochemical Research Methods

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt et al.

BMC BIOINFORMATICS (2010)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Biochemistry & Molecular Biology

The Pfam protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

Food limitation leads to behavioral diversification and dietary specialization in sea otters

M. Tim Tinker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Evolution of mammals and their gut microbes

Ruth E. Ley et al.

SCIENCE (2008)

Article Biology

Diving and foraging energetics of the smallest marine mammal, the sea otter (Enhydra lutris)

Laura C. Yeates et al.

JOURNAL OF EXPERIMENTAL BIOLOGY (2007)

Article Multidisciplinary Sciences

An obesity-associated gut microbiome with increased capacity for energy harvest

Peter J. Turnbaugh et al.

NATURE (2006)

Review Marine & Freshwater Biology

Chitin production by arthropods in the hydrosphere

HM Cauchie

HYDROBIOLOGIA (2002)

Article Biotechnology & Applied Microbiology

Chitinolytic bacteria of the mammal digestive tract

J Simunek et al.

FOLIA MICROBIOLOGICA (2001)