期刊
STAR PROTOCOLS
卷 3, 期 1, 页码 -出版社
ELSEVIER
DOI: 10.1016/j.xpro.2021.101045
关键词
-
资金
- Science and Engineering Research Board Department of Science and Technology Government of INDIA
- DST (DST-SERB)
- [EMR/2016/004829]
This paper presents a protocol for global proteome profiling of respiratory specimens from COVID-19 patients, patients suspected with COVID-19, and H1N1 patients. The method includes virus inactivation, protein quantification and digestion, desalting of peptides, high-resolution mass spectrometry-based analysis, and downstream bioinformatics analysis.
In this protocol, we describe global proteome profiling for the respiratory specimen of COVID-19 patients, patients suspected with COVID-19, and H1N1 patients. In this protocol, details for identifying host, viral, or bacterial proteome (Meta-proteome) are provided. Major steps of the protocol include virus inactivation, protein quantification and digestion, desalting of peptides, high-resolution mass spectrometry (HRMS)-based analysis, and downstream bioinformatics analysis. For complete details on the use and execution of this profile, please refer to Maras et al. (2021).
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