Comparisons of bond valences and distances for CO- and N2-bound clusters of FeMo-cofactors

By comparisons of N-2 and isoelectronic substrate CO bound FeMo-cofactors (FeMo-cos) in nitrogenases, we have used a classical bond valence method to calculate the oxidation states of the iron and molybdenum atoms in FeMo-cos. For single N-2- and CO-bound FeMo-cos that have the same charge in iron counterparts, Fe1/7 can be unambiguously assigned to Fe(iii), while Fe3/4/5 show different degrees of mixed valences related to the individual iron atoms in FeMo-cos. The only difference is the valence of binding sites Fe2 and Fe6, where N-2-bound FeMo-co in 6UG0 shows +3 and +2, respectively, while the opposite is observed in the CO-bound FeMo-cos in 4TKV. For double CO- and N-2-bound FeMo-cos with different coordination modes, the N-2-bound species in 6UG0 performs a similar oxidation state and more electron-localized than those of CO-bound species in 7JRF. Calculations also show an unprecedented Mo(ii) in N-2-bound FeMo-cos with monodentate homocitrate, while they show Mo(iii) in CO-bound and other high resolution nitrogenases. Bond comparisons imply that monodentate homocitrate and unreasonable long Mo-O distances are attributed to the low valence of Mo(ii) in N-2-bound FeMo-cos.

Automated summary

By comparing N-2 and CO bound FeMo-cofactors, we have calculated the oxidation states of the iron and molybdenum atoms in FeMo-cos. We found that different coordination modes and binding sites can affect the distribution of oxidation states.