相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Quantitative model of eukaryotic Cdk control through the Forkhead CONTROLLER
Matteo Barberis
NPJ SYSTEMS BIOLOGY AND APPLICATIONS (2021)
A high-resolution protein architecture of the budding yeast genome
Matthew J. Rossi et al.
NATURE (2021)
Accumulation of cis- and trans-regulatory variations is associated with phenotypic divergence of a complex trait between yeast species
Offir Lupo et al.
G3-GENES GENOMES GENETICS (2021)
Cyclin/Forkhead-mediated coordination of cyclin waves: an autonomous oscillator rationalizing the quantitative model of Cdk control for budding yeast
Matteo Barberis
NPJ SYSTEMS BIOLOGY AND APPLICATIONS (2021)
Computational biology approaches for mapping transcriptional regulatory networks
Violaine Saint-Andre
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2021)
Signaling Network of Forkhead Family of Transcription Factors (FOXO) in Dietary Restriction
Yizhou Jiang et al.
CELLS (2020)
FOXO transcription factor family in cancer and metastasis
Yannasittha Jiramongkol et al.
CANCER AND METASTASIS REVIEWS (2020)
Learning causal networks using inducible transcription factors and transcriptome-wide time series
Sean R. Hackett et al.
MOLECULAR SYSTEMS BIOLOGY (2020)
Role of FOXO Transcription Factors in Cancer Metabolism and Angiogenesis
Mohd Farhan et al.
CELLS (2020)
Does Calorie Restriction Modulate Inflammaging via FoxO Transcription Factors?
Sang-Eun Kim et al.
NUTRIENTS (2020)
Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs
Thierry D. G. A. Mondeel et al.
NPJ SYSTEMS BIOLOGY AND APPLICATIONS (2020)
ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast
Thierry D. G. A. Mondeel et al.
NUCLEIC ACIDS RESEARCH (2019)
Roles of forkhead box O (FoxO) transcription factors in neurodegenerative diseases: A panoramic view
Wei Hu et al.
PROGRESS IN NEUROBIOLOGY (2019)
GEMMER: GEnome-wide tool for Multi-scale Modeling data Extraction and Representation for Saccharomyces cerevisiae
Thierry D. G. A. Mondeel et al.
BIOINFORMATICS (2018)
Keeping Neurons Young and Foxy: FoxOs Promote Neuronal Plasticity
Colleen N. McLaughlin et al.
TRENDS IN GENETICS (2018)
Conserved forkhead dimerization motif controls DNA replication timing and spatial organization of chromosomes in S. cerevisiae
A. Zachary Ostrow et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
A Clb/Cdk1-mediated regulation of Fkh2 synchronizes CLB expression in the budding yeast cell cycle
Christian Linke et al.
NPJ SYSTEMS BIOLOGY AND APPLICATIONS (2017)
Genome-wide binding studies reveal DNA binding specificity mechanisms and functional interplay amongst Forkhead transcription factors
Xi Chen et al.
NUCLEIC ACIDS RESEARCH (2016)
Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase
Jared M. Peace et al.
GENOME RESEARCH (2016)
CYCLoPs: A Comprehensive Database Constructed from Automated Analysis of Protein Abundance and Subcellular Localization Patterns in Saccharomyces cerevisiae
Judice L. Y. Koh et al.
G3-GENES GENOMES GENETICS (2015)
Large-Scale Genetic Perturbations Reveal Regulatory Networks and an Abundance of Gene-Specific Repressors
Patrick Kemmeren et al.
CELL (2014)
UpSet: Visualization of Intersecting Sets
Alexander Lex et al.
IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS (2014)
MACE: model based analysis of ChIP-exo
Liguo Wang et al.
NUCLEIC ACIDS RESEARCH (2014)
Fkh1 and Fkh2 Bind Multiple Chromosomal Elements in the S. cerevisiae Genome with Distinct Specificities and Cell Cycle Dynamics
A. Zachary Ostrow et al.
PLOS ONE (2014)
Modeling Biology Spanning Different Scales: An Open Challenge
Filippo Castiglione et al.
BIOMED RESEARCH INTERNATIONAL (2014)
Sic1 plays a role in timing and oscillatory behaviour of B-type cyclins
Matteo Barberis et al.
BIOTECHNOLOGY ADVANCES (2012)
Forkhead Transcription Factors Establish Origin Timing and Long-Range Clustering in S. cerevisiae
Simon R. V. Knott et al.
CELL (2012)
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Stephen G. Landt et al.
GENOME RESEARCH (2012)
YeastMine-an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit
Rama Balakrishnan et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2012)
High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints
Yuchun Guo et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution
Ho Sung Rhee et al.
CELL (2011)
A Comprehensive Genomic Binding Map of Gene and Chromatin Regulatory Proteins in Saccharomyces
Bryan J. Venters et al.
MOLECULAR CELL (2011)
Dynamics of Cdk1 Substrate Specificity during the Cell Cycle
Mardo Koivomaegi et al.
MOLECULAR CELL (2011)
Regulation of yeast forkhead transcription factors and FoxM1 by cyclin-dependent and polo-like kinases
Hiroshi Murakami et al.
CELL CYCLE (2010)
Specific Genetic Interactions Between Spindle Assembly Checkpoint Proteins and B-Type Cyclins in Saccharomyces cerevisiae
Amy E. Ikui et al.
GENETICS (2009)
Irreversibility of mitotic exit is the consequence of systems-level feedback
Sandra Lopez-Aviles et al.
NATURE (2009)
ChIP-seq: advantages and challenges of a maturing technology
Peter J. Park
NATURE REVIEWS GENETICS (2009)
Mitotic CDKs control the metaphase-anaphase transition and trigger spindle elongation
Rami Rahal et al.
GENES & DEVELOPMENT (2008)
High-resolution timing of cell cycle-regulated gene expression
Maga Rowicka et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Forkhead proteins control the outcome of transcription factor binding by antiactivation
Warren P. Voth et al.
EMBO JOURNAL (2007)
Genetic reconstruction of a functional transcriptional regulatory network
Zhanzhi Hu et al.
NATURE GENETICS (2007)
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
KD MacIsaac et al.
BMC BIOINFORMATICS (2006)
FoxM1 is required for execution of the mitotic programme and chromosome stability
J Laoukili et al.
NATURE CELL BIOLOGY (2005)
Transcriptional regulatory code of a eukaryotic genome
CT Harbison et al.
NATURE (2004)
Regulation of cell cycle-specific gene expression through cyclin-dependent kinase-mediated phosphorylation of the forkhead transcription factor Fkh2p
A Pic-Taylor et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
Serial regulation of transcriptional regulators in the yeast cell cycle
I Simon et al.
CELL (2001)
S-phase cyclins are required for a stable arrest at metaphase
MA Meyn et al.
CURRENT BIOLOGY (2000)
Forkhead transcription factors, Fkh1p and Fkh2p, collaborate with Mcm1p to control transcription required for M-phase
R Kumar et al.
CURRENT BIOLOGY (2000)
Forkhead-like transcription factors recruit Ndd1 to the chromatin of G2/M-specific promoters
M Koranda et al.
NATURE (2000)
Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth
GF Zhu et al.
NATURE (2000)
分享论文
