期刊
PROGRESS IN BIOMEDICAL ENGINEERING
卷 4, 期 1, 页码 -出版社
IOP Publishing Ltd
DOI: 10.1088/2516-1091/ac2cdf
关键词
computational modeling; systems biology; simulation; prediction
资金
- NSF-Simons Southeast Center for Mathematics and Biology (SCMB)
- National Science Foundation [DMS1764406]
- Simons [Foundation/SFARI 594594]
This review surveys hybrid modeling methodologies that blend two or more mathematical forms to describe time-dependent processes in a multivariate system. These models can bridge different scales and forms, providing new opportunities for studying biological systems.
Systems biology models are typically considered across a spectrum from mechanistic to abstracted description; however, the lines between these forms of modeling are increasingly blurred. Ever-increasing computational power is providing novel opportunities for bridging time and length scales. Furthermore, despite biological mechanisms or network topology often ill-defined, the acquisition of high-throughput data leaves modelers with the desire to leverage available measurements. This review surveys modeling tools in which two or more mathematical forms are blended to describe time-dependent processes in a multivariate system. While most commonly manifested as continuous/discrete description, other forms such as mechanistic/inference or deterministic/stochastic hybrid models can be generated. Recent innovations in hybrid modeling methodologies and new applications illustrate advantages for combining model formats to gaining biological systems level insight.
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