相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。PHYLUCE is a software package for the analysis of conserved genomic loci
Brant C. Faircloth
BIOINFORMATICS (2016)
An Exon-Capture System for the Entire Class Ophiuroidea
Andrew F. Hugall et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Exon capture phylogenomics: efficacy across scales of divergence
Jason G. Bragg et al.
MOLECULAR ECOLOGY RESOURCES (2016)
Replicated divergence in cichlid radiations mirrors a major vertebrate innovation
Matthew D. McGee et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2016)
Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga)
Joseph D. Manthey et al.
SYSTEMATIC BIOLOGY (2016)
LOW-COVERAGE, WHOLE-GENOME SEQUENCING OF ARTOCARPUS CAMANSI (MORACEAE) FOR PHYLOGENETIC MARKER DEVELOPMENT AND GENE DISCOVERY
Elliot M. Gardner et al.
APPLICATIONS IN PLANT SCIENCES (2016)
SPECIES TREE ESTIMATION OF DIPLOID HELIANTHUS (ASTERACEAE) USING TARGET ENRICHMENT
Jessica D. Stephens et al.
AMERICAN JOURNAL OF BOTANY (2015)
Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus group scincid lizards
Matthew C. Brandley et al.
BMC EVOLUTIONARY BIOLOGY (2015)
The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews
Thomas C. Giarla et al.
SYSTEMATIC BIOLOGY (2015)
A PROTOCOL FOR TARGETED ENRICHMENT OF INTRON-CONTAINING SEQUENCE MARKERS FOR RECENT RADIATIONS: A PHYLOGENOMIC EXAMPLE FROM HEUCHERA (SAXIFRAGACEAE)
Ryan A. Folk et al.
APPLICATIONS IN PLANT SCIENCES (2015)
ASTRAL: genome-scale coalescent-based species tree estimation
S. Mirarab et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies
Cedric Mariac et al.
MOLECULAR ECOLOGY RESOURCES (2014)
Target Capture and Massively Parallel Sequencing of Ultraconserved Elements for Comparative Studies at Shallow Evolutionary Time Scales
Brian Tilston Smith et al.
SYSTEMATIC BIOLOGY (2014)
HYB-SEQ: COMBINING TARGET ENRICHMENT AND GENOME SKIMMING FOR PLANT PHYLOGENOMICS
Kevin Weitemier et al.
APPLICATIONS IN PLANT SCIENCES (2014)
A TARGET ENRICHMENT METHOD FOR GATHERING PHYLOGENETIC INFORMATION FROM HUNDREDS OF LOCI: AN EXAMPLE FROM THE COMPOSITAE
Jennifer R. Mandel et al.
APPLICATIONS IN PLANT SCIENCES (2014)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Inferring ancient divergences requires genes with strong phylogenetic signals
Leonidas Salichos et al.
NATURE (2013)
Draft genome sequence of the mulberry tree Morus notabilis
Ningjia He et al.
NATURE COMMUNICATIONS (2013)
A TARGETED ENRICHMENT STRATEGY FOR MASSIVELY PARALLEL SEQUENCING OF ANGIOSPERM PLASTID GENOMES
Gregory W. Stull et al.
APPLICATIONS IN PLANT SCIENCES (2013)
TARGETED ENRICHMENT STRATEGIES FOR NEXT-GENERATION PLANT BIOLOGY
Richard Cronn et al.
AMERICAN JOURNAL OF BOTANY (2012)
Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales
Ke Bi et al.
BMC GENOMICS (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
Alan R. Lemmon et al.
SYSTEMATIC BIOLOGY (2012)
Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
Brant C. Faircloth et al.
SYSTEMATIC BIOLOGY (2012)
Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing
Shannon C. K. Straub et al.
BMC GENOMICS (2011)
Target-enrichment strategies for next-generation sequencing
Lira Mamanova et al.
NATURE METHODS (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Biopython: freely available Python tools for computational molecular biology and bioinformatics
Peter J. A. Cock et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
Andreas Gnirke et al.
NATURE BIOTECHNOLOGY (2009)
Automated generation of heuristics for biological sequence comparison
GS Slater et al.
BMC BIOINFORMATICS (2005)