3.9 Article

High-grade ovarian cancer associated H/ACA snoRNAs promote cancer cell proliferation and survival

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Pseudouridine RNA modification detection and quantification by RT-PCR

Wen Zhang et al.

Summary: In this study, a RT-PCR and gel electrophoresis based method called CLAP was developed to sensitively and quantitatively assess Psi modification in mRNA/lncRNA. The method visualizes both Psi-modified and unmodified target sites and validates high throughput sequencing results.

METHODS (2022)

Article Biochemistry & Molecular Biology

NOP10 predicts lung cancer prognosis and its associated small nucleolar RNAs drive proliferation and migration

Chunhong Cui et al.

Summary: This study reveals the oncogenic role of H/ACA box snoRNPs in NSCLC, suggesting them as potential new biomarkers and therapeutic targets for the disease.

ONCOGENE (2021)

Article Medicine, General & Internal

Ovarian cancer population screening and mortality after long-term follow-up in the UK Collaborative Trial of Ovarian Cancer Screening (UKCTOCS): a randomised controlled trial

Usha Menon et al.

Summary: The long-term follow-up of the UK Collaborative Trial of Ovarian Cancer Screening (UKCTOCS) did not show a significant reduction in deaths due to ovarian or tubal cancer with screening. While there was an increase in early-stage cancer detection in the MMS group, it did not translate into lives saved, highlighting the importance of specifying cancer mortality as the primary outcome in screening trials. Consequently, general population screening for ovarian and tubal cancer cannot be recommended.

LANCET (2021)

Article Biotechnology & Applied Microbiology

SnoRNA copy regulation affects family size, genomic location and family abundance levels

Danny Bergeron et al.

Summary: The study reveals that snoRNA copy regulation affects family sizes, genomic location of the members, and controls both member and total family abundance to meet the needs of individual tissues. Additionally, the expression variability of individual snoRNA family members is preferred over the total variability of the family, pointing towards differential regulation mechanisms exist to ensure uniformity of the total family abundance across tissues.

BMC GENOMICS (2021)

Article Biotechnology & Applied Microbiology

Annotation of snoRNA abundance across human tissues reveals complex snoRNA-host gene relationships

Etienne Fafard-Couture et al.

Summary: The study reveals that snoRNAs are not a single homogeneous group of housekeeping genes, but include highly regulated tissue-enriched RNAs. The results demonstrate that the architecture of snoRNA host genes varies in order to uncouple the host and snoRNA expressions, meeting the different snoRNA abundance levels and functional needs of human tissues.

GENOME BIOLOGY (2021)

Article Biochemistry & Molecular Biology

Ensembl 2021

Kevin L. Howe et al.

Summary: The Ensembl project provides genome annotation and data dissemination services for vertebrate species, including detailed annotation of gene structures, regulatory elements, and variants, as well as inferring the evolutionary history of genes and genomes. They offer integrated genomic data through various means such as genome browsers, search interfaces, specialist tools, and download files. Recent developments include the Ensembl Rapid Release and the SARS-CoV-2 genome browser, aiding in the international scientific response to the COVID-19 pandemic.

NUCLEIC ACIDS RESEARCH (2021)

Article Biochemistry & Molecular Biology

snoDB: an interactive database of human snoRNA sequences, abundance and interactions

Philia Bouchard-Bourelle et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Biochemical Research Methods

ngsReports: a Bioconductor package for managing FastQC reports and other NGS related log files

Christopher M. Ward et al.

BIOINFORMATICS (2020)

Article Biochemistry & Molecular Biology

HydraPsiSeq: a method for systematic and quantitative mapping of pseudouridines in RNA

Virginie Marchand et al.

NUCLEIC ACIDS RESEARCH (2020)

Article Biochemistry & Molecular Biology

Meta-analysis based gene expression profiling reveals functional genes in ovarian cancer

Lin Zhao et al.

BIOSCIENCE REPORTS (2020)

Review Cell Biology

The cellular landscape of mid-size noncoding RNA

Vincent Boivin et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2019)

Article Biochemical Research Methods

CoCo: RNA-seq read assignment correction for nested genes and multimapped reads

Gabrielle Deschamps-Francoeur et al.

BIOINFORMATICS (2019)

Review Oncology

The ribosome, (slow) beating heart of cancer (stem) cell

Amandine Bastide et al.

ONCOGENESIS (2018)

Article Oncology

Early Detection of Ovarian Cancer

Kevin M. Elias et al.

HEMATOLOGY-ONCOLOGY CLINICS OF NORTH AMERICA (2018)

Article Biochemistry & Molecular Biology

Landscape of the complete RNA chemical modifications in the human 80S ribosome

Masato Taoka et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Medicine, Research & Experimental

iCELLigence real-time cell analysis system for examining the cytotoxicity of drugs to cancer cell lines (Review)

Leyla Turker Sener et al.

EXPERIMENTAL AND THERAPEUTIC MEDICINE (2017)

Article Multidisciplinary Sciences

CombiROC: an interactive web tool for selecting accurate marker combinations of omics data

Saveria Mazzara et al.

SCIENTIFIC REPORTS (2017)

Article Biochemical Research Methods

cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing

Andrey Kechin et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2017)

Article Medicine, Research & Experimental

VEGFA activates an epigenetic pathway upregulating ovarian cancer-initiating cells

Kibeom Jang et al.

EMBO MOLECULAR MEDICINE (2017)

Review Pathology

Biological markers of prognosis, response to therapy and outcome in ovarian carcinoma

Marta Szajnik et al.

EXPERT REVIEW OF MOLECULAR DIAGNOSTICS (2016)

Article Oncology

The TGFβ pathway stimulates ovarian cancer cell proliferation by increasing IGF1R levels

Elisenda Alsina-Sanchis et al.

INTERNATIONAL JOURNAL OF CANCER (2016)

Article Biochemistry & Molecular Biology

RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase

Ryan M. Nottingham et al.

Article Multidisciplinary Sciences

Diverse human extracellular RNAs are widely detected in human plasma

Jane E. Freedman et al.

NATURE COMMUNICATIONS (2016)

Article Oncology

Ovarian serous borderline tumors with noninvasive and invasive peritoneal implants: A case report each

Banushree C. Srinivasamurthy et al.

JOURNAL OF CANCER RESEARCH AND THERAPEUTICS (2015)

Review Cell Biology

The emerging landscape of small nucleolar RNAs in cell biology

Fabien Dupuis-Sandoval et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2015)

Review Cell Biology

Small RNAs with big implications: new insights into H/ACA snoRNA function and their role in human disease

Mary McMahon et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency

Gabrielle Deschamps-Francoeur et al.

NUCLEIC ACIDS RESEARCH (2014)

Review Immunology

Cell death paradigms in the pathogenesis of Mycobacterium tuberculosis infection

Dinesh Kumar Parandhaman et al.

FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

Small nucleolar RNA 42 acts as an oncogene in lung tumorigenesis

Y-P Mei et al.

ONCOGENE (2012)

Article Public, Environmental & Occupational Health

Physician Knowledge and Awareness of CA-125 as a Screen for Ovarian Cancer in the Asymptomatic, Average-Risk Population

Sherri L. Stewart et al.

HEALTH EDUCATION & BEHAVIOR (2012)

Article Biochemistry & Molecular Biology

Alternative splicing of SYK regulates mitosis and cell survival

Panagiotis Prinos et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Small nucleolar RNA signatures as biomarkers for non-small-cell lung cancer

Jipei Liao et al.

MOLECULAR CANCER (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Cancer-associated regulation of alternative splicing

Julian P. Venables et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)

Review Obstetrics & Gynecology

Early detection and treatment of ovarian cancer: shifting from early stage to minimal volume of disease based on a new model of carcinogenesis

Robert J. Kurman et al.

AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY (2008)

Article Biochemistry & Molecular Biology

The 3D rRNA modification maps database: with interactive tools for ribosome analysis

Dorota Piekna-Przybylska et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs

Laurent Lestrade et al.

NUCLEIC ACIDS RESEARCH (2006)