☆ 4.5 Article

Dosage compensation of Z sex chromosome genes in avian fibroblast cells

GENOME BIOLOGY (2023)

相关参考文献

注意：仅列出部分参考文献，下载原文获取全部文献信息。

Article Genetics & Heredity

ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data

Jessica Severin et al.

Summary: In the genomic era, data dissemination and visualization play an essential role in scientific publications and research involving large-scale genome-wide data sets. However, creating custom supporting websites can be impractical due to programming effort, server infrastructure, and maintenance burden. ZENBU-Reports provides a web application for creating interactive scientific portals with graphical interfaces, enabling storage, and secured collaborative sharing of user-uploaded data. It offers commonly used scientific visualization elements, presenting a comprehensive solution for interactive display and dissemination during the entire lifespan of a scientific project.

NAR GENOMICS AND BIOINFORMATICS (2023)

添加到收藏夹

Article Cell Biology

The human inactive X chromosome modulates expression of the active X chromosome

Adrianna K. San Roman et al.

Summary: The study reveals that the regulation of human X chromosomes involves both cis and trans effects, with some genes being affected by the overall Xi-wide transcriptional attenuation and others being modulated by Xi at the individual Xa gene level. These regulations play an important role in the expression changes of X chromosome genes.

CELL GENOMICS (2023)

添加到收藏夹

Article Biotechnology & Applied Microbiology

Dosage compensation of Z sex chromosome genes in avian fibroblast cells

Ruslan Deviatiiarov et al.

Summary: Sex in birds is genetically determined, but the molecular mechanism behind it is not well-understood. Research shows that most genes on the avian Z sex chromosome are strictly compensated, similar to the mammalian X chromosome. Furthermore, a sex-dimorphic gene called Ribosomal Protein S6 has been identified.

GENOME BIOLOGY (2023)

添加到收藏夹

Article Biology

Single-cell atlas of early chick development reveals gradual segregation of neural crest lineage from the neural plate border during neurulation

Ruth M. Williams et al.

Summary: This study generates a single-cell atlas of the developing chick epiblast and focuses on the transcriptional changes at the neural plate border. The results reveal the heterogeneity of cells at the neural plate border before early neurulation, suggesting a later onset of lineage segregation compared to previous predictions.

ELIFE (2022)

添加到收藏夹

Article Oncology

PI3K/AKT/mTOR signaling pathway activity in IDH-mutant diffuse glioma and clinical implications

Esraa Mohamed et al.

Summary: The study highlights the value of proteomic assessment of signaling pathway activity in tumors as a means to identify relevant oncogenic pathways and potentially as a biomarker for identifying aggressive disease.

NEURO-ONCOLOGY (2022)

添加到收藏夹

Article Multidisciplinary Sciences

Dosage compensation in Bombyx mori is achieved by partial repression of both Z chromosomes in males

Leah F. Rosin et al.

Summary: Research on the chromatin structure in the silkmoth, Bombyx mori, reveals that the two male sex chromosomes are equally downregulated after dosage compensation (DC) is established. In females, the Z chromosome chromatin becomes more accessible and repositions towards the nuclear center during the early stages of DC. This study also uncovers intriguing similarities between DC mechanisms in B. mori and C. elegans, despite having evolutionarily distinct sex chromosomes, suggesting a possible role for holocentricity in DC mechanisms.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

添加到收藏夹

Article Biochemistry & Molecular Biology

A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes

Jing Liu et al.

Summary: Emus and other ratites have slower genome evolution rates compared to other birds, making them useful for reconstructing ancestral avian or vertebrate karyotype evolution. The study's findings show that ratites have fewer intra and inter-chromosomal changes than other birds since diverging from turtles. The distinct structure of the emu W chromosome, with highly heterochromatic and recently evolved regions, suggests important early steps in sex chromosome evolution.

GENOME RESEARCH (2021)

添加到收藏夹

Article Multidisciplinary Sciences

The X chromosome dosage compensation program during the development of cynomolgus monkeys

Ikuhiro Okamoto et al.

Summary: The mechanism of X chromosome inactivation in cynomolgus monkeys is unique, with females achieving X chromosome inactivation and up-regulation coincidentally by one week after implantation, while males show progressive X chromosome up-regulation. This finding provides a foundation for understanding dosage compensation mechanisms in primates, including humans.

SCIENCE (2021)

添加到收藏夹

Article Multidisciplinary Sciences

Primary sex determination in birds depends on DMRT1 dosage, but gonadal sex does not determine adult secondary sex characteristics

Jason Ioannidis et al.

Summary: In birds, sex determination is thought to depend on a sex chromosome gene dosage mechanism, with the gene DMRT1 playing a key role. Experiments showed that ZZ chickens lacking DMRT1 developed ovaries instead of testes, while blocking estrogen synthesis in ZW embryos led to testis development, highlighting the interconnected roles of DMRT1 and estrogen in avian sex determination.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

添加到收藏夹

Article Evolutionary Biology

Multi-Copy Gene Family Evolution on the Avian W Chromosome

Thea F. Rogers et al.

Summary: The study reveals the impact of gene copy number on gene family expansion and female fecundity on avian W chromosome, attempting to elucidate the driving factors. It shows that the gene copy number on duck W chromosome is relatively limited, predominantly influenced by purifying selection.

JOURNAL OF HEREDITY (2021)

添加到收藏夹

Article Biochemistry & Molecular Biology

DMRT1 gene disruption alone induces incomplete gonad feminization in chicken

Hong Jo Lee et al.

Summary: This study generated chickens with disrupted DMRT1 gene and revealed its importance in male chicken embryonic development. Disruption of DMRT1 resulted in gonad feminization, but functional feminine reproductivity could not be achieved after interfering with hormone synthesis.

FASEB JOURNAL (2021)

添加到收藏夹

Article Biology

Sex chromosome evolution among amniotes: is the origin of sex chromosomes non-random?

Lukas Kratochvil et al.

Summary: Sex chromosomes in amniotes have evolved dozens of times, suggesting their evolution is non-random, although this pattern is not very strong. While many syntenic blocks representing putatively independently evolved sex chromosomes are unique, repeatedly co-opted chromosomes offer an excellent model system for testing evolutionary scenarios on sex chromosome evolution.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2021)

添加到收藏夹

Editorial Material Genetics & Heredity

The Curious Case of Avian Sex Determination

Craig A. Smith et al.

Summary: The study by Ioannidis and colleagues highlights the role of the DMRT1 gene as the master regulator of testis development in chickens. Surprisingly, when this gene is deleted in genetic males leading to ovary formation, the body still maintains male characteristics, challenging the previous belief that somatic sex in birds is primarily hormone-driven.

TRENDS IN GENETICS (2021)

添加到收藏夹

Article Biochemistry & Molecular Biology

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam et al.

GENOME RESEARCH (2020)

添加到收藏夹

Article Biology

De novo assembly of the Indian blue peacock (Pavo cristatus) genome using Oxford Nanopore technology and Illumina sequencing

Ruby Dhar et al.

GIGASCIENCE (2019)

添加到收藏夹

Article Biochemistry & Molecular Biology

Regional epigenetic differentiation of the Z Chromosome between sexes in a female heterogametic system

Dan Sun et al.

GENOME RESEARCH (2019)

添加到收藏夹

Review Genetics & Heredity

Xist RNA in action: Past, present, and future

Agnese Loda et al.

PLOS GENETICS (2019)

添加到收藏夹

Article Multidisciplinary Sciences

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

Tsukasa Kouno et al.

NATURE COMMUNICATIONS (2019)

添加到收藏夹

Article Biochemistry & Molecular Biology

Systematic analysis of transcription start sites in avian development

Marina Lizio et al.

PLOS BIOLOGY (2017)

添加到收藏夹

Article Cell Biology

Balancing up and downregulation of the C. elegans X chromosomes

Alyssa C. Lau et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2015)

添加到收藏夹

Article Genetics & Heredity

Conservation of Regional Variation in Sex-Specific Sex Chromosome Regulation

Alison E. Wright et al.

GENETICS (2015)

添加到收藏夹

Article Cell Biology

Dosage Compensation in Drosophila

John C. Lucchesi et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2015)

添加到收藏夹

Article Genetics & Heredity

Conservation of Regional Variation in Sex-Specific Sex Chromosome Regulation

Alison E. Wright et al.

GENETICS (2015)

添加到收藏夹

Review Biotechnology & Applied Microbiology

Xist localization and function: new insights from multiple levels

Andrea Cerase et al.

GENOME BIOLOGY (2015)

添加到收藏夹

Review Biochemistry & Molecular Biology

Avian sex, sex chromosomes, and dosage compensation in the age of genomics

Jennifer A. Marshall Graves

CHROMOSOME RESEARCH (2014)

添加到收藏夹

Article Developmental Biology

HINTW, a W-Chromosome HINT Gene in Chick, Is Expressed Ubiquitously and Is a Robust Female Cell Marker Applicable in Intraspecific Chimera Studies

Hiroki Nagai et al.

GENESIS (2014)

添加到收藏夹

Article Biochemistry & Molecular Biology

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

Hideya Kawaji et al.

GENOME RESEARCH (2014)

添加到收藏夹

Article Multidisciplinary Sciences

A promoter-level mammalian expression atlas

Alistair R. R. Forrest et al.

NATURE (2014)

添加到收藏夹

Article Developmental Biology

Gonadal Asymmetry and Sex Determination in Birds

Silvana Guioli et al.

SEXUAL DEVELOPMENT (2014)

添加到收藏夹

Article Biochemistry & Molecular Biology

Sex Determination: Why So Many Ways of Doing It?

Doris Bachtrog et al.

PLOS BIOLOGY (2014)

添加到收藏夹

Article Developmental Biology

Sexually dimorphic expression and estradiol mediated up-regulation of a sex-linked ribosomal gene, RPS6, in the zebra finch brain

Kalpana D. Acharya et al.

DEVELOPMENTAL NEUROBIOLOGY (2013)

添加到收藏夹

Article Multidisciplinary Sciences

Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution

Beatriz Vicoso et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

添加到收藏夹

Article Biochemistry & Molecular Biology

Evidence for avian cell autonomous sex identity (CASI) and implications for the sex-determination process?

M. Clinton et al.

CHROMOSOME RESEARCH (2012)

添加到收藏夹

Article Developmental Biology

The long non-coding RNA, MHM, plays a role in chicken embryonic development, including gonadogenesis

Kelly N. Roeszler et al.

DEVELOPMENTAL BIOLOGY (2012)

添加到收藏夹

Article Anatomy & Morphology

Embryonic Development of the Emu, Dromaius novaehollandiae

Hiroki Nagai et al.

DEVELOPMENTAL DYNAMICS (2011)

添加到收藏夹

Article Biotechnology & Applied Microbiology

Sex-dimorphic gene expression and ineffective dosage compensation of Z-linked genes in gastrulating chicken embryos

Shaobing O. Zhang et al.

BMC GENOMICS (2010)

添加到收藏夹

Review Ornithology

Sex determination in birds: a review

Craig A. Smith

EMU-AUSTRAL ORNITHOLOGY (2010)

添加到收藏夹

Article Biochemistry & Molecular Biology

Sex bias and dosage compensation in the zebra finch versus chicken genomes: General and specialized patterns among birds

Yuichiro Itoh et al.

GENOME RESEARCH (2010)

添加到收藏夹

Article Multidisciplinary Sciences

Somatic sex identity is cell autonomous in the chicken

D. Zhao et al.

NATURE (2010)

添加到收藏夹

Article Biochemistry & Molecular Biology

Avian sex chromosomes: dosage compensation matters

Heather A. McQueen et al.

CHROMOSOME RESEARCH (2009)

添加到收藏夹

Article Ecology

All dosage compensation is local: Gene-by-gene regulation of sex-biased expression on the chicken Z chromosome

J. E. Mank et al.

HEREDITY (2009)

添加到收藏夹

Article Developmental Biology

Genetic evidence against a role for W-linked histidine triad nucleotide binding protein (HINTW) in avian sex determination

Craig A. Smith et al.

INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY (2009)

添加到收藏夹

Article Multidisciplinary Sciences

The avian Z-linked gene DMRT1 is required for male sex determination in the chicken

Craig A. Smith et al.

NATURE (2009)

添加到收藏夹

Article Biotechnology & Applied Microbiology

Transcriptional features of genomic regulatory blocks

Altuna Akalin et al.

GENOME BIOLOGY (2009)

添加到收藏夹

Article Genetics & Heredity

A Bird's-Eye View of Sex Chromosome Dosage Compensation

Arthur P. Arnold et al.

Annual Review of Genomics and Human Genetics (2008)

添加到收藏夹

Article Biology

Faced with inequality:: chicken do not have a general dosage compensation of sex-linked genes

Hans Ellegren et al.

BMC BIOLOGY (2007)

添加到收藏夹

Article Biochemistry & Molecular Biology

Gene conversion drives the evolution of HINTW, an ampliconic gene on the female-specific avian W chromosome

N Backström et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

添加到收藏夹

Article Cell Biology

Ribosomal protein S6 phosphorylation is a determinant of cell size and glucose homeostasis

I Ruvinsky et al.

GENES & DEVELOPMENT (2005)

添加到收藏夹

Article Multidisciplinary Sciences

X-inactivation profile reveals extensive variability in X-linked gene expression in females

L Carrel et al.

NATURE (2005)

添加到收藏夹

Article Biochemistry & Molecular Biology

Transcripts of the MHM region on the chicken Z chromosome accumulate as non-coding RNA in the nucleus of female cells adjacent to the DMRT1 locus

M Teranishi et al.

CHROMOSOME RESEARCH (2001)

添加到收藏夹

© Peeref 2019-2024. All rights reserved.