相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Discovering gene regulatory networks of multiple phenotypic groups using dynamic Bayesian networks
Polina Suter et al.
BRIEFINGS IN BIOINFORMATICS (2022)
Dynamic Bayesian Network Learning to Infer Sparse Models From Time Series Gene Expression Data
Hamda B. Ajmal et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2022)
Reconstruction of Gene Regulatory Networks Using Multiple Datasets
Mehrzad Saremi et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2022)
A comprehensive survey of regulatory network inference methods using single cell RNA sequencing data
Hung Nguyen et al.
BRIEFINGS IN BIOINFORMATICS (2021)
GAERF: predicting lncRNA-disease associations by graph auto-encoder and random forest
Qing-Wen Wu et al.
BRIEFINGS IN BIOINFORMATICS (2021)
A comprehensive overview and critical evaluation of gene regulatory network inference technologies
Mengyuan Zhao et al.
BRIEFINGS IN BIOINFORMATICS (2021)
Phyllostomid Bats: A Unique Mammalian Radiation. Edited by Theodore H. Fleming, Liliana M. Dávalos, and Marco A. R. Mello. Chicago (Illinois): University of Chicago Press. $65.00. ix + 470 p. + 8 pl.; ill.; subject and taxonomic indexes. ISBN: 978-0-226-69612-6 (hc); 978-0-226-69626-3 (eb). 2020.
Rick A. Adams
QUARTERLY REVIEW OF BIOLOGY (2021)
An order independent algorithm for inferring gene regulatory network using quantile value for conditional independence tests
Sayyed Hadi Mahmoodi et al.
SCIENTIFIC REPORTS (2021)
A Fast and Furious Bayesian Network and Its Application of Identifying Colon Cancer to Liver Metastasis Gene Regulatory Networks
Enze Liu et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2021)
Reverse engineering gene regulatory network based on complex-valued ordinary differential equation model
Bin Yang et al.
BMC BIOINFORMATICS (2021)
MMFGRN: a multi-source multi-model fusion method for gene regulatory network reconstruction
Wenying He et al.
BRIEFINGS IN BIOINFORMATICS (2021)
ATEN: And/Or tree ensemble for inferring accurate Boolean network topology and dynamics
Ning Shi et al.
BIOINFORMATICS (2020)
Reconstructing gene regulatory networks via memetic algorithm and LASSO based on recurrent neural networks
Luowen Liu et al.
SOFT COMPUTING (2020)
Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA-TF-gene network approach in humans and mice
Aimin Li et al.
BRIEFINGS IN BIOINFORMATICS (2020)
Inference of gene regulatory networks based on nonlinear ordinary differential equations
Baoshan Ma et al.
BIOINFORMATICS (2020)
Activation by NarL at the Escherichia coli ogt promoter
Patcharawarin Ruanto et al.
BIOCHEMICAL JOURNAL (2020)
PFBNet: a priori-fused boosting method for gene regulatory network inference
Dandan Che et al.
BMC BIOINFORMATICS (2020)
A neuro-evolution approach to infer a Boolean network from time-series gene expressions
Shohag Barman et al.
BIOINFORMATICS (2020)
GRRFNet: Guided Regularized Random Forest-based Gene Regulatory Network Inference Using Data Integration
Yongqing Zhang et al.
2020 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (2020)
Inductive inference of gene regulatory network using supervised and semi-supervised graph neural networks
Juexin Wang et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2020)
Deep learning for time series classification: a review
Hassan Ismail Fawaz et al.
DATA MINING AND KNOWLEDGE DISCOVERY (2019)
A Novel Method of Gene Regulatory Network Structure Inference from Gene Knock-Out Expression Data
Xiang Chen et al.
TSINGHUA SCIENCE AND TECHNOLOGY (2019)
BiXGBoost: a scalable, flexible boosting-based method for reconstructing gene regulatory networks
Ruiqing Zheng et al.
BIOINFORMATICS (2019)
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks
Thomas Moerman et al.
BIOINFORMATICS (2019)
A Boolean network inference from time-series gene expression data using a genetic algorithm
Shohag Barman et al.
BIOINFORMATICS (2018)
RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes
Raghvendra Mall et al.
NUCLEIC ACIDS RESEARCH (2018)
BTNET : boosted tree based gene regulatory network inference algorithm using time-course measurement data
Sungjoon Park et al.
BMC SYSTEMS BIOLOGY (2018)
Extreme learning machines for reverse engineering of gene regulatory networks from expression time series
M. Rubiolo et al.
BIOINFORMATICS (2018)
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
Socorro Gama-Castro et al.
NUCLEIC ACIDS RESEARCH (2016)
BGRMI: A method for inferring gene regulatory networks from time-course gene expression data and its application in breast cancer research
Luis F. Iglesias-Martinez et al.
SCIENTIFIC REPORTS (2016)
Combining tree-based and dynamical systems for the inference of gene regulatory networks
Van Anh Huynh-Thu et al.
BIOINFORMATICS (2015)
Mining Gene Regulatory Networks by Neural Modeling of Expression Time-Series
Mariano Rubiolo et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2015)
cytoHubba: identifying hub objects and sub-networks from complex interactome
Chia-Hao Chin et al.
BMC SYSTEMS BIOLOGY (2014)
A review on the computational approaches for gene regulatory network construction
Lian En Chai et al.
COMPUTERS IN BIOLOGY AND MEDICINE (2014)
Wisdom of crowds for robust gene network inference
Daniel Marbach et al.
NATURE METHODS (2012)
GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods
Thomas Schaffter et al.
BIOINFORMATICS (2011)
Metabolomic and transcriptomic stress response of Escherichia coli
Szymon Jozefczuk et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
Advantages and limitations of current network inference methods
Riet De Smet et al.
NATURE REVIEWS MICROBIOLOGY (2010)
Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
Van Anh Huynh-Thu et al.
PLOS ONE (2010)
Revealing strengths and weaknesses of methods for gene network inference
Daniel Marbach et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
CRP regulator modulates multidrug resistance of Escherichia coli by repressing the mdtEF multidrug efflux genes
Kunihiko Nishino et al.
JOURNAL OF ANTIBIOTICS (2008)
Properties of developmental gene regulatory networks
Eric H. Davidson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
How to infer gene networks from expression profiles (vol 3, pg 78, 2007)
Mukesh Bansal et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Transcriptional regulation of the fad regulon genes of Escherichia coli by ArcA
Byung-Kwan Cho et al.
MICROBIOLOGY-SGM (2006)
ArcA works with Fnr as a positive regulator of Vitreoscilla (bacterial) hemoglobin gene expression in Escherichia coli
JG Yang et al.
MICROBIOLOGICAL RESEARCH (2005)
Regulation of ndh expression in Escherichia coli by Fis
L Jackson et al.
MICROBIOLOGY-SGM (2004)
Transcription regulation by tandem-bound FNR at Escherichia coli promoters
AML Barnard et al.
JOURNAL OF BACTERIOLOGY (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
分享论文
