4.7 Article

Co-phylogeny of a hyper-symbiotic system: Endosymbiotic bacteria (Gammaproteobacteria), chewing lice (Insecta: Phthiraptera) and birds (Passeriformes)

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Genetics & Heredity

Draft genome assemblies of the avian louse Brueelia nebulosa and its associates using long-read sequencing from an individual specimen

Andrew D. Sweet et al.

Summary: Sequencing HMW DNA has greatly improved complete genome sequences for nonmodel organisms. In this study, we used PacBio long reads and TELL-Seq linked reads to assemble and annotate the genome of a single feather louse from a European Starling. We obtained a high-quality genome and annotated numerous genes similar to the human louse genome. This study demonstrates the potential to obtain high-quality genomes from individual small organisms, contributing to our understanding of individual genomic diversity and evolution.

G3-GENES GENOMES GENETICS (2023)

Article Evolutionary Biology

Hitchhiking into the future on a fly: Toward a better understanding of phoresy and avian louse evolution (Phthiraptera) by screening bird carcasses for phoretic lice on hippoboscid flies (Diptera)

Leshon Lee et al.

Summary: This study illustrates how new natural history data on phoretic relationships can be obtained quickly using modern and cost-effective barcoding techniques. The authors developed a protocol based on screening bird carcasses to generate new records of avian lice riding on hippoboscid flies. They argue that large-scale NGS barcoding can help resolve many phoretic relationships between arthropods.

SYSTEMATIC ENTOMOLOGY (2022)

Article Statistics & Probability

SPlit: An Optimal Method for Data Splitting

V. Roshan Joseph et al.

Summary: In this article, an optimal method named SPlit for splitting a dataset into training and testing sets is proposed, which is based on the support points algorithm and can be applied to both regression and classification problems. The implementation on real datasets shows substantial improvement compared to the commonly used random splitting procedure.

TECHNOMETRICS (2022)

Article Parasitology

PHYLOGENETIC RELATIONSHIPS OF GUIMARAESIELLA AND PRICEIELLA (PHTHIRAPTERA: ISCHNOCERA) FROM BABBLERS AND NON-BABBLERS (PASSERIFORMES)

Chunpo Tian et al.

Summary: Through analysis of genetic sequences, it was found that Guimaraesiella (Cicchinella) forms a monophyletic group of lice from babblers, but the relationships between Guimaraesiella (Guimaraesiella), Guimaraesiella (Cicchinella), and Priceiella could not be resolved. Additionally, the position of the lineage containing only the aberrant species Guimaraesiella montisodalis remains unresolved.

JOURNAL OF PARASITOLOGY (2022)

Article Biochemistry & Molecular Biology

The interplay between host biogeography and phylogeny in structuring diversification of the feather louse genus Penenirmus

Kevin P. Johnson et al.

Summary: This study looks at the interplay between parasite diversification, biogeography, and host association, revealing that host-switching is a major process in diversification, typically occurring within single major biogeographic regions, with some exceptions.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2021)

Article Zoology

Four new species of Guimaraesiella (Phthiraptera: Ischnocera: Brueelia-complex) from China

Daniel R. Gustafsson et al.

Summary: Four new species of Guimaraesiella are described and illustrated based on specimens collected in South China. This is the first record of a species from the Brueelia-complex found on a member of the Zosteropidae.

ZOOTAXA (2021)

Article Microbiology

Ecological Divergence Within the Enterobacterial Genus Sodalis: From Insect Symbionts to Inhabitants of Decomposing Deadwood

Vojtech Tlaskal et al.

Summary: The study introduces a new free-living Sodalis genus strain, S. ligni, mainly found in decomposing deadwood, exhibiting significant ecological divergence from other insect endosymbionts.

FRONTIERS IN MICROBIOLOGY (2021)

Article Ecology

The reduced genome of a heritable symbiont from an ectoparasitic feather feeding louse

Leila Alickovic et al.

Summary: The bacterial symbiont in feather feeding lice was found to lack the ability to synthesize the amino acids needed by the lice, raising questions about the biology of feather chewing lice and the roles of symbiotic bacteria in the evolution of diverse avian parasites.

BMC ECOLOGY AND EVOLUTION (2021)

Article Biochemistry & Molecular Biology

MEGA11 Molecular Evolutionary Genetics Analysis Version 11

Koichiro Tamura et al.

Summary: MEGA software, a mature tool for computational molecular evolution, has been enhanced with new additions for building timetrees of species, pathogens, and gene families using rapid relaxed-clock methods. These additions include methods for estimating divergence times, confidence intervals, and new options for tagging sequences with spatiotemporal sampling information. The enhancements aim to improve user experience, result quality, and the pace of biological discovery.

MOLECULAR BIOLOGY AND EVOLUTION (2021)

Article Biochemical Research Methods

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

Emmanuel Paradis et al.

BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

Phoretic dispersal influences parasite population genetic structure

Emily DiBlasi et al.

MOLECULAR ECOLOGY (2018)

Article Evolutionary Biology

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Andrew Rambaut et al.

SYSTEMATIC BIOLOGY (2018)

Article Virology

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

Marc A. Suchard et al.

VIRUS EVOLUTION (2018)

Article Multidisciplinary Sciences

Arsenophonus and Sodalis replacements shape evolution of symbiosis in louse flies

Eva Sochova et al.

Article Biochemistry & Molecular Biology

Unlocking the black box of feather louse diversity: A molecular phylogeny of the hyper-diverse genus Brueelia

Sarah E. Bush et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

Cophylogenetic analysis of New World ground-doves (Ayes: Columbidae) and their parasitic wing lice (Insecta: Phthiraptera: Columbicola)

Andrew D. Sweet et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)

Article Biotechnology & Applied Microbiology

Arsenophonus and Sodalis Symbionts in Louse Flies: an Analogy to the Wigglesworthia and Sodalis System in Tsetse Flies

Eva Novakova et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Review Microbiology

Extreme genome reduction in symbiotic bacteria

John P. McCutcheon et al.

NATURE REVIEWS MICROBIOLOGY (2012)

Article Ecology

phytools: an R package for phylogenetic comparative biology (and other things)

Liam J. Revell

METHODS IN ECOLOGY AND EVOLUTION (2012)

Article Biochemical Research Methods

Jane: a new tool for the cophylogeny reconstruction problem

Chris Conow et al.

ALGORITHMS FOR MOLECULAR BIOLOGY (2010)

Article Ecology

The microbial dimension in insect nutritional ecology

A. E. Douglas

FUNCTIONAL ECOLOGY (2009)

Review Biotechnology & Applied Microbiology

Beneficial interactions between insects and gut bacteria

R. Rajagopal

INDIAN JOURNAL OF MICROBIOLOGY (2009)

Article Ecology

COMPARATIVE TRANSMISSION DYNAMICS OF COMPETING PARASITE SPECIES

Christopher W. Harbison et al.

ECOLOGY (2008)

Article Biotechnology & Applied Microbiology

Bacterial endosymbiont of the slender pigeon louse, Columbicola columbae, allied to endosymbionts of grain weevils and tsetse flies

Takema Fukatsu et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Entomology

Bacteria in oral secretions of an endophytic insect inhibit antagonistic fungi

Yasmin J. Cardoza et al.

ECOLOGICAL ENTOMOLOGY (2006)

Article Ecology

Cophylogenetic relationships between penguins and their chewing lice

JC Banks et al.

JOURNAL OF EVOLUTIONARY BIOLOGY (2006)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Multidisciplinary Sciences

Type III secretion systems and the evolution of mutualistic endosymbiosis

C Dale et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

The population genetics of host specificity: genetic differentiation in dove lice (Insecta : Phthiraptera)

KP Johnson et al.

MOLECULAR ECOLOGY (2002)