相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Nitrogen Fixation in Mesoscale Eddies of the North Pacific Subtropical Gyre: Patterns and Mechanisms
Mathilde Dugenne et al.
GLOBAL BIOGEOCHEMICAL CYCLES (2023)
Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory
Aleix Obiol et al.
MICROBIOME (2023)
Biogeochemical Dynamics in Adjacent Mesoscale Eddies of Opposite Polarity
Benedetto Barone et al.
GLOBAL BIOGEOCHEMICAL CYCLES (2022)
Seasonality and episodic variation in picoeukaryote diversity and structure reveal community resilience to disturbances in the North Pacific Subtropical Gyre
Yoshimi M. Rii et al.
LIMNOLOGY AND OCEANOGRAPHY (2022)
The dynamic trophic architecture of open-ocean protist communities revealed through machine-guided metatranscriptomics
Bennett S. Lambert et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)
Urgent need for consistent standards in functional enrichment analysis
Kaumadi L. Wijesooriya et al.
PLOS COMPUTATIONAL BIOLOGY (2022)
Mixotrophy in the bloom-forming genus Phaeocystis and other haptophytes
Sebastiaan Koppelle et al.
HARMFUL ALGAE (2022)
Influence of cyclonic and anticyclonic eddies on plankton in the southeastern Mediterranean Sea during late summertime
Natalia Belkin et al.
OCEAN SCIENCE (2022)
Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate
Ramon Massana et al.
ISME JOURNAL (2021)
Combined pigment and metatranscriptomic analysis reveals highly synchronized diel patterns of phenotypic light response across domains in the open oligotrophic ocean
Kevin W. Becker et al.
ISME JOURNAL (2021)
Microbial dynamics of elevated carbon flux in the open ocean's abyss
Kirsten E. Poff et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean
Natalie R. Cohen et al.
NATURE MICROBIOLOGY (2021)
Come rain or shine: Depth not season shapes the active protistan community at station ALOHA in the North Pacific Subtropical Gyre
Gerid A. Ollison et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2021)
Microbial community transcriptional patterns vary in response to mesoscale forcing in the North Pacific Subtropical Gyre
Matthew J. Harke et al.
ENVIRONMENTAL MICROBIOLOGY (2021)
Impact of Mesoscale Eddies on Deep Chlorophyll Maxima
Marin Cornec et al.
GEOPHYSICAL RESEARCH LETTERS (2021)
Cyclonic eddies modulate temporal and spatial decoupling of particulate carbon, nitrogen, and biogenic silica export in the North Pacific Subtropical Gyre
Kuanbo Zhou et al.
LIMNOLOGY AND OCEANOGRAPHY (2021)
Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean
Caterina R. Giner et al.
ISME JOURNAL (2020)
Expression of genes involved in phagocytosis in uncultured heterotrophic flagellates
Aurelie Labarre et al.
LIMNOLOGY AND OCEANOGRAPHY (2020)
Bacterioplankton metabolism of phytoplankton lysates across a cyclone-anticyclone eddy dipole impacts the cycling of semi-labile organic matter in the photic zone
Emma K. Wear et al.
LIMNOLOGY AND OCEANOGRAPHY (2020)
Dynamic subcellular translocation of V-type H+-ATPase is essential for biomineralization of the diatom silica cell wall
Daniel P. Yee et al.
NEW PHYTOLOGIST (2020)
Eddies Affect Subsurface Phytoplankton and Oxygen Distributions in the North Pacific Subtropical Gyre
Peng Xiu et al.
GEOPHYSICAL RESEARCH LETTERS (2020)
Resilience of plankton trophic structure to an eddy-stimulated diatom bloom in the North Pacific Subtropical Gyre
Moira Decima et al.
MARINE ECOLOGY PROGRESS SERIES (2020)
Mixotroph ecology: More than the sum of its parts
Ben A. Ward
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean
Dominique Boeuf et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Transcriptomic Response to Feeding and Starvation in a Herbivorous Dinoflagellate
Ewelina T. Rubin et al.
FRONTIERS IN MARINE SCIENCE (2019)
The MAR databases: development and implementation of databases specific for marine metagenomics
Terje Klemetsen et al.
NUCLEIC ACIDS RESEARCH (2018)
Shifting metabolic priorities among key protistan taxa within and below the euphotic zone
Sarah K. Hu et al.
ENVIRONMENTAL MICROBIOLOGY (2018)
Clustering huge protein sequence sets in linear time
Martin Steinegger et al.
NATURE COMMUNICATIONS (2018)
Endocytosis-mediated siderophore uptake as a strategy for Fe acquisition in diatoms
Elena Kazamia et al.
SCIENCE ADVANCES (2018)
Gene-based predictive models of trophic modes suggest Asgard archaea are not phagocytotic
John A. Burns et al.
NATURE ECOLOGY & EVOLUTION (2018)
Evaluation of Mixotrophy-Associated Gene Expression in Two Species of Polar Marine Algae
Zaid M. McKie-Krisberg et al.
FRONTIERS IN MARINE SCIENCE (2018)
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
Jaime Huerta-Cepas et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Salmon provides fast and bias-aware quantification of transcript expression
Rob Patro et al.
NATURE METHODS (2017)
A pivotal role for ocean eddies in the distribution of microbial communities across the Antarctic Circumpolar Current
Siddarthan Venkatachalam et al.
PLOS ONE (2017)
Temporal evolution of near-surface chlorophyll over cyclonic eddy lifecycles in the southeastern Pacific
Jie Huang et al.
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS (2017)
Effect of light and prey availability on gene expression of the mixotrophic chrysophyte, Ochromonas sp
Alle A. Y. Lie et al.
BMC GENOMICS (2017)
Ecosystem Structure and Dynamics in the North Pacific Subtropical Gyre: New Views of an Old Ocean
David M. Karl et al.
ECOSYSTEMS (2017)
Mechanisms of Physical-Biological-Biogeochemical Interaction at the Oceanic Mesoscale
Dennis J. McGillicuddy
ANNUAL REVIEW OF MARINE SCIENCE, VOL 8 (2016)
Mesoscale and sub-mesoscale variability in phytoplankton community composition in the Sargasso Sea
Bridget E. Cotti-Rausch et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2016)
Gene expression characterizes different nutritional strategies among three mixotrophic protists
Zhenfeng Liu et al.
FEMS MICROBIOLOGY ECOLOGY (2016)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Identification of protein coding regions in RNA transcripts
Shiyuyun Tang et al.
NUCLEIC ACIDS RESEARCH (2015)
Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes
Alexandra Z. Worden et al.
SCIENCE (2015)
Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability
Zhenfeng Liu et al.
Frontiers in Microbiology (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Community differentiation and population enrichment of Sargasso Sea bacterioplankton in the euphotic zone of a mesoscale mode-water eddy
Craig E. Nelson et al.
ENVIRONMENTAL MICROBIOLOGY (2014)
Biogeochemical responses associated with the passage of a cyclonic eddy based on shipboard observations in the western North Pacific
Chiho Sukigara et al.
JOURNAL OF OCEANOGRAPHY (2014)
De Novo Transcriptomes of a Mixotrophic and a Heterotrophic Ciliate from Marine Plankton
Luciana F. Santoferrara et al.
PLOS ONE (2014)
Transcriptional responses of three model diatoms to nitrate limitation of growth
Sara J. Bender et al.
FRONTIERS IN MARINE SCIENCE (2014)
The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
Laure Guillou et al.
NUCLEIC ACIDS RESEARCH (2013)
Functional Divergence and Convergent Evolution in the Plastid-Targeted Glyceraldehyde-3-Phosphate Dehydrogenases of Diverse Eukaryotic Algae
Daniel Gaston et al.
PLOS ONE (2013)
Marine Protistan Diversity
David A. Caron et al.
ANNUAL REVIEW OF MARINE SCIENCE, VOL 4 (2012)
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
Evguenia Kopylova et al.
BIOINFORMATICS (2012)
Detecting Differential Expression in RNA-sequence Data Using Quasi-likelihood with Shrunken Dispersion Estimates
Steven P. Lund et al.
STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY (2012)
The Role of Photosynthesis and Food Uptake for the Growth of Marine Mixotrophic Dinoflagellates
Per Juel Hansen
JOURNAL OF EUKARYOTIC MICROBIOLOGY (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Global observations of nonlinear mesoscale eddies
Dudley B. Chelton et al.
PROGRESS IN OCEANOGRAPHY (2011)
Comparative proteomics of the mixotrophic dinoflagellate Prorocentrum micans growing in different trophic modes
Jun-Bo Shim et al.
ALGAE (2011)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Growth, feeding and ecological roles of the mixotrophic and heterotrophic dinoflagellates in marine planktonic food webs
Hae Jin Jeong et al.
Ocean Science Journal (2010)
The origins of phagocytosis and eukaryogenesis
Natalya Yutin et al.
BIOLOGY DIRECT (2009)
Particle fluxes associated with mesoscale eddies in the Sargasso Sea
K. O. Buesseler et al.
DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2008)
The influence of a mature cyclonic eddy on particle export in the lee of Hawaii
Kanchan Maiti et al.
DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2008)
Physical dynamics and biological implications of a mesoscale eddy in the lee of Hawai'i:: Cyclone Opal observations during E-Flux III
Francesco Nencioli et al.
DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2008)
Diatoms in the desert: Plankton community response to a mesoscale eddy in the subtropical North Pacific
Susan L. Brown et al.
DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2008)
Depth-stratified phytoplankton dynamics in Cyclone Opal, a subtropical mesoscale eddy
Michael R. Landry et al.
DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2008)
The transient oasis: Nutrient-phytoplankton dynamics and particle export in Hawaiian lee cyclones
Yoshimi M. Rii et al.
DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2008)
Satellite and in situ observations of the bio-optical signatures of two mesoscale eddies in the Sargasso Sea
D. A. Siegel et al.
DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2008)
Nitrogen fixation in an anticyclonic eddy in the oligotrophic North Pacific Ocean
Allison A. Fong et al.
ISME JOURNAL (2008)
Understanding nitrogen limitation in Aureococcus anophagefferens (Pelagophyceae) through cDNA and qRT-PCR analysis
Gry Mine Berg et al.
JOURNAL OF PHYCOLOGY (2008)
Mesoscale eddies drive increased silica export in the subtropical Pacific Ocean
Claudia R. Benitez-Nelson et al.
SCIENCE (2007)
Eddy/wind interactions stimulate extraordinary mid-ocean plankton blooms
Dennis J. McGillicuddy et al.
SCIENCE (2007)
Heterotrophic dinoilagellates: a significant component of microzooplankton biomass and major grazers of diatoms in the sea
Evelyn B. Sherr et al.
MARINE ECOLOGY PROGRESS SERIES (2007)
Microzooplankton community structure and grazing on phytoplankton, in an eddy pair in the Indian Ocean off Western Australia
Harriet L. Paterson et al.
DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2007)
Heterotrophic dinoflagellate fecal pellet production: grazing of large, chain-forming diatoms during upwelling events in Monterey Bay, California
KR Buck et al.
AQUATIC MICROBIAL ECOLOGY (2005)
Lateral transfer and recompartmentalization of Calvin cycle enzymes of plants and algae
M Rogers et al.
JOURNAL OF MOLECULAR EVOLUTION (2004)
Mixotrophy in the phototrophic harmful alga Cochlodinium polykrikoides (dinophycean):: Prey species, the effects of prey concentration, and grazing impact
HJ Jeong et al.
JOURNAL OF EUKARYOTIC MICROBIOLOGY (2004)
GO::TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
EI Boyle et al.
BIOINFORMATICS (2004)
Phytoplankton growth, microzooplankton grazing, and carbon cycling in marine systems
A Calbet et al.
LIMNOLOGY AND OCEANOGRAPHY (2004)
Impact of a cyclonic eddy on phytoplankton community structure and photosynthetic competency in the subtropical North Pacific Ocean
RD Vaillancourt et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2003)
Influence of a cyclonic eddy on microheterotroph biomass and carbon export in the lee of Hawaii
RR Bidigare et al.
GEOPHYSICAL RESEARCH LETTERS (2003)
Role of late winter mesoscale events in the biogeochemical variability of the upper water column of the North Pacific Subtropical Gyre
RM Letelier et al.
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS (2000)
Mesoscale vortices and the paradox of the plankton
A Bracco et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2000)