☆ 4.2 Review

Amazonian avian biogeography: Broadscale patterns, microevolutionary processes, and habitat-specific models revealed by multidisciplinary approaches

ORNITHOLOGY (2023)

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Editorial Material Ecology

Animal functional traits: Towards a trait-based ecology for whole ecosystems

Matthias Schleuning et al.

Summary: Functional traits and associated concepts have driven innovation in ecology, but an over-reliance on plant traits neglects the complexity of interactions across trophic levels. The expansion of trait-based ecology to include animal functional traits has opened up new possibilities for testing ecological theory. This collection of studies highlights the importance of understanding trait composition and its impact on community assembly and ecosystem functioning.

FUNCTIONAL ECOLOGY (2023)

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Editorial Material Multidisciplinary Sciences

Escaping Darwin's shadow: how Alfred Russel Wallace inspires Indigenous researchers

Camila C. C. Ribas

NATURE (2023)

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Article Geography, Physical

A 1.8 million year history of Amazon vegetation

Andrea K. Kern et al.

Summary: This study investigates the vegetation history of the Amazon basin over the past 18 million years. The research suggests that the Amazonian lowlands were mainly composed of tropical rainforests, warm-temperate rainforests, and tropical seasonal forests, and their composition correlated with global climate cycles. The study also highlights the sensitivity of tropical rainforests to changes in CO2, temperature, and moisture availability.

QUATERNARY SCIENCE REVIEWS (2023)

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Review Multidisciplinary Sciences

Human impacts outpace natural processes in the Amazon

James S. Albert et al.

Summary: Amazonian environments are experiencing unprecedented degradation due to industrial and agricultural activities, posing a threat to its rich biodiversity and essential ecosystem services. Deforestation driven by export market demands and global climate change are the main drivers of this degradation. Urgent policies are necessary to prevent further damage, but action requires political will and leadership. Failing to protect the Amazon would have detrimental consequences for the entire biosphere.

SCIENCE (2023)

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Article Evolutionary Biology

Power of Bayesian and Heuristic Tests to Detect Cross-Species Introgression with Reference to Gene Flow in the Tamias quadrivittatus Group of North American Chipmunks

Jiayi Ji et al.

Summary: Over the past two decades, genomic data have been widely used for detecting historical gene flow between species. The Tamias quadrivittatus group of chipmunks in North America, which originated through rapid speciation events, show extensive mitochondrial introgression. However, a recent analysis of targeted nuclear loci found no evidence for cross-species introgression, suggesting cytonuclear discordance.

SYSTEMATIC BIOLOGY (2023)

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Review Ornithology

Neotropical ornithology: Reckoning with historical assumptions, removing systemic barriers, and reimagining the future

Leticia Soares et al.

Summary: To advance Neotropical ornithology, it is crucial to address systemic exclusion, improve research practices, and provide better funding and professional development opportunities. Collaborative leadership, investment in basic field biology research, and the promotion of anti-colonial agendas are key to progress.

ORNITHOLOGICAL APPLICATIONS (2023)

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Article Geochemistry & Geophysics

The Amazon paleoenvironment resulted from geodynamic, climate, and sea-level interactions

Victor Sacek et al.

Summary: This study reveals that the formation of the Andes, climate evolution, and sea-level oscillations were the controlling factors for the transition from intermittent marine to lacustrine environments in the Amazon before the formation of the transcontinental river. It is also found that the evolving climate shortened the time interval between the end of marine influence and the onset of the transcontinental Amazon River.

EARTH AND PLANETARY SCIENCE LETTERS (2023)

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Article Ecology

Phylogeographic and demographic patterns reveal congruent histories in seven Amazonian White-Sand ecosystems birds

Joao Marcos Guimaraes Capurucho et al.

Summary: This study analyzed genetic data from seven bird species in the white-sand ecosystems of the Amazon rainforest and found that these species responded in similar ways to environmental and landscape changes. Population expansions were mainly driven by the formation of new white-sand patches and the return of wetter conditions. Pleistocene climatic cycles impacted the distribution and dynamics of open vegetation habitats in the Amazon, especially in the Northern region, driving genetic diversity and demographic patterns of associated biota.

JOURNAL OF BIOGEOGRAPHY (2023)

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Article Biochemistry & Molecular Biology

Late Pleistocene landscape changes and habitat specialization as promoters of population genomic divergence in Amazonian floodplain birds

Leilton Willians Luna et al.

Summary: This study examines the genetic divergence of three bird species specialized in seasonally flooded habitats in the Amazon basin and Rio Branco, and finds that genetic divergence is influenced by habitat specialization and river color. The complete disruption of gene flow between populations occurred during the Late Pleistocene transition, about 250,000 years ago, leading to the current genetic differentiation.

MOLECULAR ECOLOGY (2023)

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Article Biochemistry & Molecular Biology

Amazonian birds in more dynamic habitats have less population genetic structure and higher gene flow

Oscar Johnson et al.

Summary: Understanding the factors that influence genetic structure across species is essential for studying speciation and population genetics. This study examined population genetic data from bird species specialized in different Amazonian habitat types. The results showed that habitat type significantly affects population genetic structure, with species in more dynamic habitats having higher levels of gene flow. These differences in genetic variation across taxa specialized in distinct habitats could lead to divergent responses to environmental change and habitat-specific diversification dynamics over time.

MOLECULAR ECOLOGY (2023)

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Article Entomology

Improved access to biological control genetic resources: navigating through the Convention on Biological Diversity and the Nagoya Protocol

Luciana C. C. Silvestri et al.

Summary: The use of living organisms or natural substances to combat the damage caused by harmful organisms has brought significant benefits to the global community. The Convention on Biological Diversity and the Nagoya Protocol regulate access to genetic resources and the fair distribution of benefits. However, non-strategic national measures may hinder access to biological control genetic resources. This paper recommends different pathways to enhance access to these resources.

BIOCONTROL (2023)

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Article Entomology

Accessing biological control genetic resources: the South American experience

Fernando Mc Kay et al.

Summary: National idiosyncrasies in the adoption and implementation of the Nagoya Protocol pose obstacles for research-based activities that require access to genetic resources, especially in the field of biological control. South America, as a provider of biological control genetic resources, is reviewed for its adoption status and the number of certificates issued for accessing these resources. The common problems associated with access and export of biological control genetic resources are summarized based on the experience of an Argentine NGO. Communication and awareness-raising activities are suggested to persuade policy makers in South America on the importance of facilitating the exchange of biocontrol genetic resources and complying with ABS regulations.

BIOCONTROL (2023)

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Article Biochemistry & Molecular Biology

Pervasive gaps in Amazonian ecological research

Raquel L. Carvalho et al.

Summary: Biodiversity loss is a major challenge of our time and understanding how ecological communities respond to environmental change is crucial. Despite the availability of global databases, research in tropical regions, especially in the Amazon rainforest, is lacking. This study shows that a significant percentage of understudied areas in the Brazilian Amazonia are vulnerable to climate and land use changes, highlighting the urgent need for action. Rating: 8/10.

CURRENT BIOLOGY (2023)

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Review Ornithology

On species concepts, species delimitation criteria, taxonomy committees, and biases: a response to Lima (2022a)

Alexandre Aleixo

Summary: In a recent commentary, Lima claims that the Brazilian Ornithological Records Committee (CBRO) is misinterpreting the general lineage species concept (GLSC) in making species ranking decisions, leading to misinformation within the Brazilian ornithological community and misleading users of the CBRO checklist. However, the arguments presented by Lima are unfounded and result from an inaccurate interpretation of the GLSC and a lack of understanding of the practical implementation of species concepts by taxonomists and taxonomy committees. Evidence from recent taxonomic treatments implemented by the CBRO confirms the use of the GLSC in guiding species ranking decisions. Unsubstantiated commentaries like Lima's may unintentionally amplify representation bias against Latin American ornithologists in global initiatives such as the publication of a single worldwide avian checklist.

ORNITHOLOGY RESEARCH (2023)

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Article Ecology

Displaced clines in an avian hybrid zone (Thamnophilidae: Rhegmatorhina) within an Amazonian interfluve

Glaucia Del-Rio et al.

Summary: The study investigates the formation of hybrid zones between two obligate army-ant-followers, the White-breasted Antbird and the Harlequin Antbird, in the Amazon Basin. Major geographic displacement between mitochondrial and nuclear clines was observed, with potential causes including sampling error, genetic drift, and asymmetric cytonuclear incompatibilities. Data indicates expansion and unidirectional introgression of one species into the distribution of the other.

EVOLUTION (2022)

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Article Ecology

Connecting Amazonian historical biogeography and local assemblages of understorey birds: Recurrent guild proportionality within areas of endemism

Pilar L. M. Braga et al.

Summary: This study investigated the diversity patterns of understorey bird assemblages in unflooded forests in the Amazon. The results showed that different areas of endemism exhibited distinct patterns of species richness, composition, and captures, but the proportion of species and individuals within guilds remained similar, indicating that species replacements occur while maintaining ecological functions. Interspecific competition and resource availability were found to be more important than environmental heterogeneity in structuring understorey bird assemblages.

JOURNAL OF BIOGEOGRAPHY (2022)

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Article Ecology

Habitat association constrains population history in two sympatric ovenbirds along Amazonian floodplains

Waleska Elizangela dos Santos Barbosa et al.

Summary: Distinct types of seasonally flooded habitats along Amazonian floodplains have different impacts on the population histories of two closely related ovenbird species. Differences in habitat preferences lead to varied demographic changes, gene flow, and population sizes, influenced by late Pleistocene and Holocene climatic variations.

JOURNAL OF BIOGEOGRAPHY (2022)

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Article Biodiversity Conservation

Neutral processes and reduced dispersal across Amazonian rivers may explain how rivers maintain species diversity after secondary contact

Sergio Santorelli Junior et al.

Summary: Amazonian rivers act as partial barriers to species dispersal and influence the distribution limits of similar species. Through simulation experiments, it was found that even if two competitively-identical species frequently cross rivers, the low probability of rare invaders outcompeting resident populations can maintain their allopatry for hundreds of generations. This process provides a plausible mechanism for the maintenance of Amazonian biodiversity and explains the spatial distribution limits caused by large rivers in the region.

PERSPECTIVES IN ECOLOGY AND CONSERVATION (2022)

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Review Environmental Sciences

State of theWorld's Birds

Alexander C. Lees et al.

Summary: The article provides an overview of the global spatiotemporal distribution of avian biodiversity, changes in our knowledge of that biodiversity, and the threats driving changes in bird species richness and abundance. It also highlights the need for increased consideration of the social context of bird conservation interventions.

ANNUAL REVIEW OF ENVIRONMENT AND RESOURCES (2022)

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Article Ecology

AVONET: morphological, ecological and geographical data for all birds

Joseph A. Tobias et al.

Summary: Functional traits provide a quantitative framework for theories in evolutionary biology, ecology, and ecosystem science. The AVONET dataset contains comprehensive functional trait data for all bird species, allowing integration with other datasets and providing a global template for testing hypotheses and exploring the origins, structure, and functioning of biodiversity.

ECOLOGY LETTERS (2022)

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Article Ecology

Genomic differentiation with gene flow in a widespread Amazonian floodplain-specialist bird species

Leilton Willians Luna et al.

Summary: Ecological, climatic, and palaeogeographical processes drive biological diversification. Our study found three genetic clusters in the Striped Woodcreeper, distributed in the western, central, and eastern parts of the Amazon Basin. Migration rates indicate historical barriers along the Amazonas-Solimoes River.

JOURNAL OF BIOGEOGRAPHY (2022)

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Article Biochemistry & Molecular Biology

A comparative phylogenomic analysis of birds reveals heterogeneous differentiation processes among Neotropical savannas

Cassia A. Lima-Rezende et al.

Summary: This study evaluated biogeographical hypotheses and connections between isolated savannas in the north and south of the Amazon River. The results showed that landscape and climate factors played important roles in population differentiation, but did not indicate a differential role between current and historical factors. The study also found multiple connections between the Cerrado and Amazonian savannas, rejecting the hypothesis of the Atlantic corridor.

MOLECULAR ECOLOGY (2022)

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Article Zoology

Diversification and species limits in scale-backed antbirds (Willisornis: Thamnophilidae), an Amazonian endemic lineage

Tania Fontes Quaresma et al.

Summary: This article presents a phylogenetic and population genetic analysis of the Willisornis genus, endemic to the Amazon Basin. The study reveals 13 independent genetic lineages and confirms the monophyly of all recognized species. The diversification of Willisornis is linked to hydrographic and climate change cycles in the Amazon Basin.

ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2022)

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Article Multidisciplinary Sciences

River network rearrangements promote speciation in lowland Amazonian birds

Lukas J. Musher et al.

Summary: The rearrangements of Amazonian river networks play an important role in promoting speciation and diversification of species. They facilitate divergence and secondary contact among populations, leading to the formation of micro-endemic and unrecognized taxa.

SCIENCE ADVANCES (2022)

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Article Ecology

Riverine Barriers as Obstacles to Dispersal in Amazonian Birds

Luciano N. Naka et al.

Summary: The research evaluated the dispersal ability of Amazonian birds through experiments, revealing significant differences among different avian families in facing riverine barriers. Hand-wing index and flying speed were key predictors of successful dispersal outcome. Ecological attributes had a relatively low explanatory power on dispersal ability.

FRONTIERS IN ECOLOGY AND EVOLUTION (2022)

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Article Ecology

Population dynamics of Amazonian floodplain forest species support spatial variation on genetic diversity but not range expansions through time

Gregory Thom et al.

Summary: This study explores the historical demographic changes of populations occurring on the floodplains of the Solimoes River in the Amazon Basin and finds that habitat specificity might be an important predictor of population connectivity.

JOURNAL OF BIOGEOGRAPHY (2022)

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Article Multidisciplinary Sciences

Rainfall and sea level drove the expansion of seasonally flooded habitats and associated bird populations across Amazonia

A. O. Sawakuchi et al.

Summary: This study found that millennial periods of higher rainfall and rising sea levels resulted in increased sediment accumulation in Amazonian river valleys. This led to the expansion of vegetation and specialized bird populations that adapted to seasonally flooded substrates, illustrating the impact of global climate change on specific Amazonian species.

NATURE COMMUNICATIONS (2022)

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Article Green & Sustainable Science & Technology

Searching for Novel Sustainability Initiatives in Amazonia

Gabriel Medina et al.

Summary: This study conducted interviews with practitioners in the Brazilian Amazon and identified a range of sustainability initiatives, including eco-business opportunities, territorial protection by grassroots movements, and novel coalitions promoting sustainability. However, most of these initiatives are still in the early stage and offer incremental rather than transformative development. Therefore, more efforts are needed to support the transformation towards sustainable and equitable development.

SUSTAINABILITY (2022)

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Article Geosciences, Multidisciplinary

Tectonics and drainage development in central Amazonia: The Jurua River

Dilce F. Rossetti et al.

Summary: Understanding the factors controlling the development of large rivers is hindered by a lack of information from modern and ancient analogues. This study focuses on the geological evolution of the Jurua River in the Pleistocene-Holocene, utilizing digital elevation models and subsurface data. Physical connections between the Jurua River and ancient valley belts were found, suggesting a tectonic origin for the development of these paleovalleys associated with rock upwarping by folding.

CATENA (2021)

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Article Geography, Physical

Late Neogene megariver captures and the Great Amazonian Biotic Interchange

James S. Albert et al.

Summary: Recent studies have revealed a large-scale biotic interchange between the Western and Eastern Amazon basins, associated with the uplift of the Northern Andes and the formation of the modern Amazon River. Tectonically-driven megariver capture events facilitated a massive biotic interchange between these basins, contributing to the overall biodiversity of Greater Amazonia.

GLOBAL AND PLANETARY CHANGE (2021)

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Article Ornithology

Birds of the Jurua River: extensive varzea forest as a barrier to terra firme birds

Glaucia Del-Rio et al.

Summary: The translation describes the importance of bird communities along the Jurua River, the necessity of conducting investigations in the middle region, and the potential impact of discovering and studying new populations.

JOURNAL OF ORNITHOLOGY (2021)

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Article Ecology

Recent divergence and lack of shared phylogeographic history characterize the diversification of neotropical savanna birds

Paul van Els et al.

Summary: Through studying the phylogeography of 23 taxa of Neotropical savanna birds, it was found that although these species do not generally share similar diversification patterns geographically, many have at least two distinct genetic groups, one north and one south of the Amazon Basin, that have only recently diverged.

JOURNAL OF BIOGEOGRAPHY (2021)

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Article Ecology

Community phylogeographic patterns reveal how a barrier filters and structures taxa in North American warm deserts

Kaiya L. Provost et al.

Summary: The study of biogeographic barriers is crucial for understanding the evolution and distribution of taxa. By synthesizing phylogeographic data across a barrier and conducting simulations, this research demonstrates how barriers interact with species traits to differentiate taxa over millions of years. However, identifying diversification modes for these taxa across the barrier remains challenging due to the limitations of commonly used demographic models.

JOURNAL OF BIOGEOGRAPHY (2021)

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Article Biodiversity Conservation

Sampling biases shape our view of the natural world

Alice C. Hughes et al.

Summary: This study explores the biases in biodiversity research, revealing widespread sampling and observation biases globally, particularly in tropical regions, and highlighting how citizen science exacerbates these biases.

ECOGRAPHY (2021)

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Article Ecology

Rugged relief and climate promote isolation and divergence between two neotropical cold-associated birds

Fabio Raposo do Amaral et al.

Summary: Historical factors play a crucial role in establishing patterns of diversity in tropical mountains, with rugged relief and climate fluctuations likely explaining most of the dynamics of diversification in plants and animals. The interplay between landscape and climate is highlighted as an important mechanism in the evolution of Neotropical montane biota.

EVOLUTION (2021)

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Article Ecology

Landscape configuration of an Amazonian island-like ecosystem drives population structure and genetic diversity of a habitat-specialist bird

Camila D. Ritter et al.

Summary: The study aims to estimate the impact of the current extension, configuration, and geographic context of campina patches on the genetic diversity and population structure of the Elaenia ruficeps. Three genetically distinct populations were identified, with asymmetrical gene flow among landscapes and decreasing migration rates with distance. The results suggest that both regional context and landscape structure shape the connectivity among populations of campina specialist birds.

LANDSCAPE ECOLOGY (2021)

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Article Multidisciplinary Sciences

Amazonia as a carbon source linked to deforestation and climate change

Luciana Gatti et al.

Summary: Studies show that total carbon emissions are higher in eastern Amazonia compared to the western part, mainly due to fire emissions. Climate change and deforestation have led to increased ecosystem stress, more frequent fires, and higher carbon emissions in eastern Amazon.

NATURE (2021)

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Article Multidisciplinary Sciences

How deregulation, drought and increasing fire impact Amazonian biodiversity

Xiao Feng et al.

Summary: Biodiversity in the Amazon Basin is vital for ecological and climatic stability, however, it is increasingly threatened by deforestation and fires. This study quantifies the impacts of deforestation and fires on Amazonian biodiversity over the past two decades. Results show that deforestation leads to habitat loss and fires exacerbate the already substantial impact. Forest policies play a crucial role in reducing fire occurrences and preserving biodiversity in the Amazon.

NATURE (2021)

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Editorial Material Ecology

Making ecology really global

Martin A. Nunez et al.

Summary: Ecology needs to thrive globally, but there are inequalities in knowledge production and exchange. Recognizing and addressing these inequalities, while embracing geographical and cultural diversity, is the first step towards solutions.

TRENDS IN ECOLOGY & EVOLUTION (2021)

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Article Ornithology

Avifaunal surveys in the central Peruvian Amazon clarify range limits and highlight links between avian and habitat diversity

Andre E. Moncrieff et al.

Wilson Journal of Ornithology (2021)

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Article Ecology

Recent population differentiation in the habitat specialist Glossy Antshrike (Aves: Thamnophilidae) across Amazonian seasonally flooded forests

Sofia Marques Silva et al.

Summary: The study revealed that the Glossy Antshrike is a single species with at least four populations, and divergences between populations occurred within the last 1.2 million years. The research also highlighted the complex population history of the species, influenced by a high dependence on southeastern clear water seasonally flooded habitats and their availability through time.

ECOLOGY AND EVOLUTION (2021)

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Decoloniality and anti-oppressive practices for a more ethical ecology

Christopher H. Trisos et al.

Summary: Authors outline five decolonizing shifts to transform academic ecological practice, challenging the discipline to become more inclusive, creative, and ethical. Expanding knowledge and incorporating varied perspectives and approaches from the natural environment and global systems are essential to make ecology inclusive of diverse populations inhabiting Earth's ecosystems.

NATURE ECOLOGY & EVOLUTION (2021)

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The implications for conservation of a major taxonomic revision of the world's birds

A. T. Simkins et al.

ANIMAL CONSERVATION (2020)

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Article Biodiversity Conservation

Climate and geographic distance are more influential than rivers on the beta diversity of passerine birds in Amazonia

Isadora E. Fluck et al.

ECOGRAPHY (2020)

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Review Environmental Sciences

Climate change and sustainable development: the case of Amazonia and policy implications

Susana Garrido Azevedo et al.

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2020)

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Genomic data reveal a protracted window of introgression during the diversification of a neotropical woodcreeper radiation

Paola Pulido-Santacruz et al.

EVOLUTION (2020)

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Article Ecology

The relative role of rivers, environmental heterogeneity and species traits in driving compositional changes in southeastern Amazonian bird assemblages

Marina Franco de Almeida Maximiano et al.

BIOTROPICA (2020)

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Article Ecology

Shifting ecosystem connectivity during the Pleistocene drove diversification and gene-flow in a species complex of Neotropical birds (Tityridae: Pachyramphus)

Lukas J. Musher et al.

JOURNAL OF BIOGEOGRAPHY (2020)

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Article Biochemistry & Molecular Biology

Moving beyond the riverine barrier vicariant paradigm

Luciano N. Naka et al.

MOLECULAR ECOLOGY (2020)

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Article Multidisciplinary Sciences

Quaternary climate changes as speciation drivers in the Amazon floodplains

Gregory Thom et al.

SCIENCE ADVANCES (2020)

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Article Ornithology

Bird migration within the Neotropics

Alex E. Jahn et al.

AUK (2020)

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Review Ecology

Avian Diversity: Speciation, Macroevolution, and Ecological Function

Joseph A. Tobias et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 51, 2020 (2020)

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Article Ornithology

A roadmap to identifying and filling shortfalls in Neotropical ornithology

Alexander Charles Lees et al.

AUK (2020)

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Article Biochemistry & Molecular Biology

Paleoclimatic evolution as the main driver of current genomic diversity in the widespread and polymorphic Neotropical songbird Arremon taciturnus

Nelson Buainain et al.

MOLECULAR ECOLOGY (2020)

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Article Biology

Towards reconciliation of the four world bird lists: hotspots of disagreement in taxonomy of raptors

Christopher J. W. McClure et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2020)

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Article Ecology

Postzygotic isolation drives genomic speciation between highly cryptic Hypocnemis antbirds from Amazonia

Aurea A. Cronemberger et al.

EVOLUTION (2020)

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Article Genetics & Heredity

Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph

Melissa J. Hubisz et al.

PLOS GENETICS (2020)

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Article Evolutionary Biology

Sister species, different histories: comparative phylogeography of two bird species associated with Amazonian open vegetation

Camila D Ritter et al.

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2020)

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Article Biology

Dispersal ability correlates with range size in Amazonian habitat-restricted birds

Joao M. G. Capurucho et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2020)

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Article Multidisciplinary Sciences

The evolution of a tropical biodiversity hotspot

Michael G. Harvey et al.

SCIENCE (2020)

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Article Biodiversity Conservation

Evaluating the contribution of dispersal to community structure in Neotropical passerine birds

Nicholas M. A. Crouch et al.

ECOGRAPHY (2019)

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Article Geography, Physical

The role of abrupt climate change in the formation of an open vegetation enclave in northern Amazonia during the late Quaternary

Andre Zular et al.

GLOBAL AND PLANETARY CHANGE (2019)

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Article Biochemistry & Molecular Biology

Recombination rate variation shapes barriers to introgression across butterfly genomes

Simon H. Martin et al.

PLOS BIOLOGY (2019)

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Article Ecology

Using river color to predict Amazonian floodplain forest avifaunas in the world's largest blackwater river basin

Thiago Orsi Laranjeiras et al.

BIOTROPICA (2019)

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Article Geology

Detrital zircons reveal sea-level and hydroclimate controls on Amazon River to deep-sea fan sediment transfer

Cody C. Mason et al.

GEOLOGY (2019)

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Article Geography, Physical

Chronology of Terra Firme formation in Amazonian lowlands reveals a dynamic Quaternary landscape

F. N. Pupim et al.

QUATERNARY SCIENCE REVIEWS (2019)

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Discovering floristic and geoecological gradients across Amazonia

Hanna Tuomisto et al.

JOURNAL OF BIOGEOGRAPHY (2019)

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A dynamic continental moisture gradient drove Amazonian bird diversification

Sofia Marques Silva et al.

SCIENCE ADVANCES (2019)

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Sergio Henrique Borges et al.

BIOTROPICA (2019)

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Article Ornithology

Avifaunal surveys along the lower Huallaga River, Region of Loreto, Peru: New distributional records, collection of topotypes, and taxonomic implications

Andre E. Moncrieff et al.

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Andean Tectonics and Mantle Dynamics as a Pervasive Influence on Amazonian Ecosystem

Tacio Cordeiro Bicudo et al.

SCIENTIFIC REPORTS (2019)

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Article Biochemistry & Molecular Biology

Current geography masks dynamic history of gene flow during speciation in northern Australian birds

Joshua Penalba et al.

MOLECULAR ECOLOGY (2019)

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Article Evolutionary Biology

Correlates of hybridization in plants

Nora Mitchell et al.

EVOLUTION LETTERS (2019)

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Article Green & Sustainable Science & Technology

Avoiding Amazonian Catastrophes: Prospects for Conservation in the 21st Century

Robert Toovey Walker et al.

ONE EARTH (2019)

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Article Ecology

Vegetation cover of Brazil in the last 21 ka: New insights into the Amazonian refugia and Pleistocenic arc hypotheses

Daniel M. Arruda et al.

GLOBAL ECOLOGY AND BIOGEOGRAPHY (2018)

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Article Evolutionary Biology

Global biodiversity research tied up by juridical interpretations of access and benefit sharing

D. Neumann et al.

ORGANISMS DIVERSITY & EVOLUTION (2018)

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Article Multidisciplinary Sciences

Hybrid speciation leads to novel male secondary sexual ornamentation of an Amazonian bird

Alfredo O. Barrera-Guzman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

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Article Geography, Physical

The influence of late Quaternary sedimentation on vegetation in an Amazonian lowland megafan

Dilce F. Rossetti et al.

EARTH SURFACE PROCESSES AND LANDFORMS (2018)

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Article Genetics & Heredity

Inferring Continuous and Discrete Population Genetic Structure Across Space

Gideon S. Bradburd et al.

GENETICS (2018)

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Article Biochemistry & Molecular Biology

Connecting Amazonian, Cerrado, and Atlantic forest histories: Paraphyly, old divergences, and modern population dynamics in tyrant-manakins (Neopelma/Tyranneutes, Ayes: Pipridae)

Joao Capurucho et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2018)

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Article Biochemistry & Molecular Biology

Evidence for mtDNA capture in the jacamar Galbula leucogastra/chalcothorax species-complex and insights on the evolution of white-sand ecosystems in the Amazon basin

Mateus Ferreira et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2018)

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Article Multidisciplinary Sciences

Amazonia is the primary source of Neotropical biodiversity

Alexandre Antonelli et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

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Article Biology

Morphologically cryptic Amazonian bird species pairs exhibit strong postzygotic reproductive isolation

Paola Pulido-Santacruz et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2018)

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Article Evolutionary Biology

Phenotypic and Genetic Structure Support Gene Flow Generating Gene Tree Discordances in an Amazonian Floodplain Endemic Species

Gregory Thom et al.

SYSTEMATIC BIOLOGY (2018)

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Article Genetics & Heredity

Inferring Continuous and Discrete Population Genetic Structure Across Space

Gideon S. Bradburd et al.

GENETICS (2018)

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Review Multidisciplinary Sciences

The future of hyperdiverse tropical ecosystems

Jos Barlow et al.

NATURE (2018)

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Article Multidisciplinary Sciences

The dual role of Amazonian rivers in the generation and maintenance of avian diversity

Luciano N. Naka et al.

SCIENCE ADVANCES (2018)

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Review Zoology

The changing course of the Amazon River in the Neogene: center stage for Neotropical diversification

James S. Albert et al.

NEOTROPICAL ICHTHYOLOGY (2018)

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Article Ecology

Phylogeography and population dynamics of Antbirds (Thamnophilidae) from Amazonian fluvial islands

Erik L. Choueri et al.

JOURNAL OF BIOGEOGRAPHY (2017)

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Article Multidisciplinary Sciences

Damming the rivers of the Amazon basin

Edgardo M. Latrubesse et al.

NATURE (2017)

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Article Multidisciplinary Sciences

Biogeography of Amazon birds: rivers limit species composition, but not areas of endemism

Ubirajara Oliveira et al.

SCIENTIFIC REPORTS (2017)

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Article Biochemistry & Molecular Biology

Correction: A latitudinal phylogeographic diversity gradient in birds

Brian Tilston Smith et al.

PLOS BIOLOGY (2017)

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Editorial Material Ecology

The highly threatened and little known Amazonian savannahs

William Douglas de Carvalho et al.

NATURE ECOLOGY & EVOLUTION (2017)

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Article Ecology

Habitat Association Predicts Genetic Diversity and Population Divergence in Amazonian Birds

Michael G. Harvey et al.

AMERICAN NATURALIST (2017)

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Article Ecology

Misuse of bird digital distribution maps creates reversed spatial diversity patterns in the Amazon

Mariana M. Vale et al.

BIOTROPICA (2017)

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Article Green & Sustainable Science & Technology

Access and Benefit Sharing under the Convention on Biological Diversity and Its Protocol: What Can Some Numbers Tell Us about the Effectiveness of the Regulatory Regime?

Nicolas Pauchard

RESOURCES-BASEL (2017)

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Article Biodiversity Conservation

What is the avifauna of Amazonian white-sand vegetation?

Sergio Henrique Borges et al.

BIRD CONSERVATION INTERNATIONAL (2016)

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Review Biodiversity Conservation

Hydropower and the future of Amazonian biodiversity

Alexander C. Lees et al.

BIODIVERSITY AND CONSERVATION (2016)

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Article Ecology

Bird Communities in Amazonian White-Sand Vegetation Patches: Effects of Landscape Configuration and Biogeographic Context

Sergio H. Borges et al.

BIOTROPICA (2016)

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Article Ecology

Comparative Phylogeography of Two Bird Species, Tachyphonus phoenicius (Thraupidae) and Polytmus theresiae (Trochilidae), Specialized in Amazonian White-sand Vegetation

Maysa V. Matos et al.

BIOTROPICA (2016)

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Article Ecology

Ephemeral ecological speciation and the latitudinal biodiversity gradient

Asher D. Cutter et al.

EVOLUTION (2016)

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Article Ecology

The architecture of river networks can drive the evolutionary dynamics of aquatic populations

Andrea T. Thomaz et al.

EVOLUTION (2016)

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Article Ornithology

Bird conservation and biodiversity research in Mexico: status and priorities

A. Townsend Peterson et al.

JOURNAL OF FIELD ORNITHOLOGY (2016)

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Article Geosciences, Multidisciplinary

Genesis of the largest Amazonian wetland in northern Brazil inferred by morphology and gravity anomalies

Dilce de Fatima Rossetti et al.

JOURNAL OF SOUTH AMERICAN EARTH SCIENCES (2016)

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Article Multidisciplinary Sciences

Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses

Anna Papadopoulou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

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Article Multidisciplinary Sciences

How Many Kinds of Birds Are There and Why Does It Matter?

George F. Barrowclough et al.

PLOS ONE (2016)

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Article Multidisciplinary Sciences

Late quaternary dynamics in the Madeira river basin, southern Amazonia (Brazil), as revealed by paleomorphological analysis

Ericson H. Hayakawa et al.

ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS (2015)

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Review Ecology

Seven Shortfalls that Beset Large-Scale Knowledge of Biodiversity

Joaquin Hortal et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 46 (2015)

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Article Ecology

Hybridization in headwater regions, and the role of rivers as drivers of speciation in Amazonian birds

Jason T. Weir et al.

EVOLUTION (2015)

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Article Geography, Physical

Land use and land cover change impacts on the regional climate of non-Amazonian South America: A review

Alvaro Salazar et al.

GLOBAL AND PLANETARY CHANGE (2015)

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Article Biochemistry & Molecular Biology

Genomic variation in a widespread Neotropical bird (Xenops minutus) reveals divergence, population expansion, and gene flow

Michael G. Harvey et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)

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Article Biochemistry & Molecular Biology

Cryptic speciation in the white-shouldered antshrike (Thamnophilus aethiops, Aves - Thamnophilidae): The tale of a transcontinental radiation across rivers in lowland Amazonia and the northeastern Atlantic Forest

Gregory Thom et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)

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Article Ornithology

Species taxonomy of birds: Which null hypothesis?

Frank B. Gill

AUK (2014)

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Article Geosciences, Multidisciplinary

The role of tectonics in the late Quaternary evolution of Brazil's Amazonian landscape

Dilce F. Rossetti

EARTH-SCIENCE REVIEWS (2014)

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Article Ecology

EltonTraits 1.0: Species-level foraging attributes of the world's birds and mammals

Hamish Wilman et al.

ECOLOGY (2014)

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Article Biochemistry & Molecular Biology

Phylogeny and historical biogeography of gnateaters (Passeriformes, Conopophagidae) in the South America forests

Henrique Batalha-Filho et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)

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Article Multidisciplinary Sciences

The drivers of tropical speciation

Brian Tilston Smith et al.

NATURE (2014)

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Article Evolutionary Biology

The Influence of Gene Flow on Species Tree Estimation: A Simulation Study

Adam D. Leache et al.

SYSTEMATIC BIOLOGY (2014)

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Article Zoology

Reassessment of the systematics of the widespread Neotropical genusCercomacra(Aves: Thamnophilidae)

Jose G. Tello et al.

ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2014)

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Article Biodiversity Conservation

Fine-scale endemism of Amazonian birds in a threatened landscape

Alexandre M. Fernandes

BIODIVERSITY AND CONSERVATION (2013)

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Article Evolutionary Biology

Combining phylogeography and landscape genetics of Xenopipo atronitens (Aves: Pipridae), a white sand campina specialist, to understand Pleistocene landscape evolution in Amazonia

Joao Marcos G. Capurucho et al.

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2013)

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Article Ecology

Habitat Specialization by Birds in Western Amazonian White-sand Forests

Jose Alvarez Alonso et al.

BIOTROPICA (2013)

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Review Evolutionary Biology

Revisiting Amazonian phylogeography: insights into diversification hypotheses and novel perspectives

Rafael N. Leite et al.

ORGANISMS DIVERSITY & EVOLUTION (2013)

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Article Multidisciplinary Sciences

Climate change patterns in Amazonia and biodiversity

Hai Cheng et al.

NATURE COMMUNICATIONS (2013)

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Article Ornithology

Connections between the Atlantic and the Amazonian forest avifaunas represent distinct historical events

Henrique Batalha-Filho et al.

JOURNAL OF ORNITHOLOGY (2013)

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Review Ecology

The Role of Mountain Ranges in the Diversification of Birds

Jon Fjeldsa et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 43 (2012)

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Letter Ecology

Across-taxa incongruence in patterns of collecting bias

Mariana M. Vale et al.

JOURNAL OF BIOGEOGRAPHY (2012)

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Article Multidisciplinary Sciences

The global diversity of birds in space and time

W. Jetz et al.

NATURE (2012)

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Article Biology

A palaeobiogeographic model for biotic diversification within Amazonia over the past three million years

Camila C. Ribas et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)

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Article Biology

High dispersal ability inhibits speciation in a continental radiation of passerine birds

Santiago Claramunt et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)

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Article Ornithology

A NEW AREA OF ENDEMISM FOR AMAZONIAN BIRDS IN THE RIO NEGRO BASIN

Sergio H. Borges et al.

WILSON JOURNAL OF ORNITHOLOGY (2012)

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Article Biochemistry & Molecular Biology

No population genetic structure in a widespread aquatic songbird from the Neotropics

Carlos Daniel Cadena et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2011)

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Article Multidisciplinary Sciences

DNA Barcode Detects High Genetic Structure within Neotropical Bird Species

Erika Sendra Tavares et al.

PLOS ONE (2011)

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Article Geography, Physical

The diversification of eastern South American open vegetation biomes: Historical biogeography and perspectives

Fernanda P. Werneck

QUATERNARY SCIENCE REVIEWS (2011)

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Article Biology

A latitudinal gradient in rates of evolution of avian syllable diversity and song length

Jason T. Weir et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2011)

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Article Ecology

A Classification of Major Naturally-Occurring Amazonian Lowland Wetlands

Wolfgang J. Junk et al.

WETLANDS (2011)

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Review Multidisciplinary Sciences

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

C. Hoorn et al.

SCIENCE (2010)

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Review Ecology

Ecology Predicts Levels of Genetic Differentiation in Neotropical Birds

Curtis W. Burney et al.

AMERICAN NATURALIST (2009)

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Article Water Resources

The impact of Quaternary sea level changes on the evolution of the Amazonian lowland

Georg Irion et al.

HYDROLOGICAL PROCESSES (2009)

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Article Multidisciplinary Sciences

Recent assembly of the Cerrado, a neotropical plant diversity hotspot, by in situ evolution of adaptations to fire

Marcelo F. Simon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

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Article Biodiversity Conservation

Effects of future infrastructure development on threat status and occurrence of Amazonian birds

Mariana M. Vale et al.

CONSERVATION BIOLOGY (2008)

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Article Ornithology

Birds of an open vegetation enclave in southern Brazilian Amazonia

Alexandre Aleixo et al.

WILSON JOURNAL OF ORNITHOLOGY (2007)

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Article Geosciences, Multidisciplinary

Regional climate change over eastern Amazonia caused by pasture and soybean cropland expansion

Gilvan Sampaio et al.

GEOPHYSICAL RESEARCH LETTERS (2007)

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Article Evolutionary Biology

Historical diversification of floodplain forest specialist species in the Amazon:: a case study with two species of the avian genus Xiphorhynchus (Aves: Dendrocolaptidae)

Alexandre Aleixo

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2006)

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Article Biodiversity Conservation

The fate of the Amazonian areas of endemism

JMC Da Silva et al.

CONSERVATION BIOLOGY (2005)

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Article Multidisciplinary Sciences

Ernst Mayr and the modern concept of species

K de Queiroz

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

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Article Ecology

The Amazon River as a dispersal barrier to passerine birds: effects of river width, habitat and taxonomy

FE Hayes et al.

JOURNAL OF BIOGEOGRAPHY (2004)

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Article Biology

South American palaeobotany and the origins of neotropical rainforests

RJ Burnham et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2004)

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Article Zoology

Initial assessment of genetic diversity in ten bird species of South American Cerrado

JM Bates et al.

STUDIES ON NEOTROPICAL FAUNA AND ENVIRONMENT (2003)

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Article Ecology

Climatic and biotic controls on annual carbon storage in Amazonian ecosystems

H Tian et al.

GLOBAL ECOLOGY AND BIOGEOGRAPHY (2000)

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