相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Peroxidase Activity and Involvement in the Oxidative Stress Response of Roseobacter denitrificans Truncated Hemoglobin
Yaya Wang et al.
PLOS ONE (2015)
Interplay of the H-Bond Donor-Acceptor Role of the Distal Residues in Hydroxyl Ligand Stabilization of Thermobifida fusca Truncated Hemoglobin
Francesco P. Nicoletti et al.
BIOCHEMISTRY (2014)
Characterization of THB1, a Chlamydomonas reinhardtii Truncated Hemoglobin: Linkage to Nitrogen Metabolism and Identification of Lysine as the Distal Heme Ligand
Eric A. Johnson et al.
BIOCHEMISTRY (2014)
H-bonding networks of the distal residues and water molecules in the active site of Thermobifida fusca hemoglobin
Francesco P. Nicoletti et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2013)
Bacterial and archaeal globins - A revised perspective
Serge N. Vinogradov et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2013)
Ligand migration through hemeprotein cavities: insights from laser flash photolysis and molecular dynamics simulations
Stefania Abbruzzetti et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2013)
Myoglobin and mitochondria: A relationship bound by oxygen and nitric oxide
Christelle Kamga et al.
NITRIC OXIDE-BIOLOGY AND CHEMISTRY (2012)
Following Ligand Migration Pathways from Picoseconds to Milliseconds in Type II Truncated Hemoglobin from Thermobifida fusca
Agnese Marcelli et al.
PLOS ONE (2012)
Role of the Distal Hydrogen-Bonding Network in Regulating Oxygen Affinity in the Truncated Hemoglobin III from Campylobacter jejuni
Pau Arroyo Manez et al.
BIOCHEMISTRY (2011)
Molecular Basis for the Substrate Stereoselectivity in Tryptophan Dioxygenase
Luciana Capece et al.
BIOCHEMISTRY (2011)
Structural characterization of a group II 2/2 hemoglobin from the plant pathogen Agrobacterium tumefaciens
Alessandra Pesce et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2011)
A hydrogen-bonding network formed by the B10-E7-E11 residues of a truncated hemoglobin from Tetrahymena pyriformis is critical for stability of bound oxygen and nitric oxide detoxification
Jotaro Igarashi et al.
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY (2011)
Comparing and Combining Implicit Ligand Sampling with Multiple Steered Molecular Dynamics to Study Ligand Migration Processes in Heme Proteins
Flavio Forti et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2011)
Ligand Migration in Methanosarcina acetivorans Protoglobin: Effects of Ligand Binding and Dimeric Assembly
Flavio Forti et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2011)
Fluoride as a Probe for H-Bonding Interactions in the Active Site of Heme Proteins: The Case of Thermobifida fusca Hemoglobin
Francesco P. Nicoletti et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
Sulfide Binding Properties of Truncated Hemoglobins
Francesco P. Nicoletti et al.
BIOCHEMISTRY (2010)
CD-HIT Suite: a web server for clustering and comparing biological sequences
Ying Huang et al.
BIOINFORMATICS (2010)
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
Alexis Criscuolo et al.
BMC EVOLUTIONARY BIOLOGY (2010)
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
Andrew M. Waterhouse et al.
BIOINFORMATICS (2009)
The hemoglobins of the sub-Antarctic fish Cottoperca gobio, a phyletically basal species - oxygen-binding equilibria, kinetics and molecular dynamics
Daniela Giordano et al.
FEBS JOURNAL (2009)
Role of Pre-A Motif in Nitric Oxide Scavenging by Truncated Hemoglobin, HbN, of Mycobacterium tuberculosis
Amrita Lama et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Peroxidase-like activity of Thermobifida fusca hemoglobin: The oxidation of dibenzylbutanolide
Roberta Torge et al.
JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC (2009)
Genome Project Standards in a New Era of Sequencing
P. S. G. Chain et al.
SCIENCE (2009)
A microscopic study of the deoxyhemoglobin-catalyzed generation of nitric oxide from nitrite anion
Laura L. Perissinotti et al.
BIOCHEMISTRY (2008)
Ligand binding to truncated hemoglobin N from Mycobacterium tuberculosis is strongly modulated by the interplay between the distal heme pocket residues and internal water
Yannick H. Ouellet et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Bond or cage effect: How nitrophorins transport and release nitric oxide
Marcelo A. Mart et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)
The roles of Tyr(CD1) and Trp(G8) in Mycobacterium tuberculosis truncated hemoglobin O in ligand binding and on the heme distal site architectures
Hugues Ouellet et al.
BIOCHEMISTRY (2007)
Simulation of heme using DFT+U: A step toward accurate spin-state energetics
Damian A. Scherlis et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2007)
Dynamical regulation of ligand migration by a gate-opening molecular switch in truncated hemoglobin-N from Mycobacterium tuberculosis
Axel Bidon-Chanal et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)
Reaction of Mycobacterium tuberculosis truncated hemoglobin O with hydrogen peroxide -: Evidence for peroxidatic activity and formation of protein-based radicals
Hugues Ouellet et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Influence of the protein matrix on intramolecular histidine ligation in ferric and ferrous hexacoordinate hemoglobins
Puspita Halder et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Time-resolved methods in Biophysics. 2. Monitoring haem proteins at work with nanosecond laser flash photolysis
Stefania Abbruzzetti et al.
PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES (2006)
Heme protein oxygen affinity regulation exerted by proximal effects
Luciana Capece et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)
Ligand interactions in the distal heme pocket of Mycobacterium tuberculosis truncated hemoglobin N:: Roles of TyrB10 and GlnE11 residues
Yannick Ouellet et al.
BIOCHEMISTRY (2006)
A phylogenomic profile of globins
SN Vinogradov et al.
BMC EVOLUTIONARY BIOLOGY (2006)
Dioxygen affinity in heme proteins investigated by computer simulation
Marcelo A. Marti et al.
JOURNAL OF INORGANIC BIOCHEMISTRY (2006)
A phylogenetic and structural analysis of truncated hemoglobins
DA Vuletich et al.
JOURNAL OF MOLECULAR EVOLUTION (2006)
Water and ligand entry in myoglobin: Assessing the speed and extent of heme pocket hydration after CO photodissociation
RA Goldbeck et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Modeling heme proteins using atomistic simulations
Damian E. Bikiel et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2006)
ProtTest: selection of best-fit models of protein evolution
F Abascal et al.
BIOINFORMATICS (2005)
Theoretical study of the truncated hemoglobin HbN:: Exploring the molecular basis of the NO detoxification mechanism
A Crespo et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)
Structural bases for heme binding and diatomic ligand recognition in truncated hemoglobins
M Milani et al.
JOURNAL OF INORGANIC BIOCHEMISTRY (2005)
Nitric oxide dioxygenase function and mechanism of flavohemoglobin, hemoglobin, myoglobin and their associated reductases
PR Gardner
JOURNAL OF INORGANIC BIOCHEMISTRY (2005)
Ancestral hemoglobins in Archaea
TAK Freitas et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
The crystal structure of Synechocystis hemoglobin with a covalent heme linkage
JA Hoy et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Thr-E11 regulates O2 affinity in Cerebratulus lacteus mini-hemoglobin
A Pesce et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Tyrosine B10 inhibits stabilization of bound carbon monoxide and oxygen in soybean leghemoglobin
S Kundu et al.
BIOCHEMISTRY (2004)
A DFT-based QM-MM approach designed for the treatment of large molecular systems:: Application to chorismate mutase
A Crespo et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2003)
Spin-dependent mechanism for diatomic ligand binding to heme
S Franzen
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Truncated hemoglobin from the cyanobacterium Synechococcus sp PCC 7002:: Evidence for hexacoordination and covalent adduct formation in the ferric recombinant protein
NL Scott et al.
BIOCHEMISTRY (2002)
Truncated hemoglobin HbN protects Mycobacterium bovis from nitric oxide
H Ouellett et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Truncated hemoglobins: A new family of hemoglobins widely distributed in bacteria, unicellular eukaryotes, and plants
JB Wittenberg et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Mechanistic studies of nitric oxide reactions with water soluble iron(II), cobalt(II), and iron(III) porphyrin complexes in aqueous solutions: Implications for biological activity
LE Laverman et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2001)
Mycobacterium tuberculosis hemoglobin N displays a protein tunnel suited for O2 diffusion to the heme
M Milani et al.
EMBO JOURNAL (2001)
Globin-coupled sensors: A class of heme-containing sensors in Archaea and Bacteria
SB Hou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Mapping the pathways for O2 entry into and exit from myoglobin
EE Scott et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Ligand binding in the ferric and ferrous states of Paramecium hemoglobin
TK Das et al.
BIOCHEMISTRY (2000)
Structural investigations of the hemoglobin of the cyanobacterium Synechocystis PCC6803 reveal a unique distal heme pocket
M Couture et al.
EUROPEAN JOURNAL OF BIOCHEMISTRY (2000)
The Pfam protein families database
A Bateman et al.
NUCLEIC ACIDS RESEARCH (2000)