相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Dissecting cancer evolution at the macro-heterogeneity and micro-heterogeneity scale
Louise J. Barber et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2015)
Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation Data
Benjamin J. Raphael et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2015)
Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue
Colin S. Cooper et al.
NATURE GENETICS (2015)
Pathway and network analysis of cancer genomes
Pau Creixell et al.
NATURE METHODS (2015)
High burden and pervasive positive selection of somatic mutations in normal human skin
Inigo Martincorena et al.
SCIENCE (2015)
An Evolutionary Approach for Identifying Driver Mutations in Colorectal Cancer
Jasmine Foo et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Identification of Constrained Cancer Driver Genes Based on Mutation Timing
Thomas Sakoparnig et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies
Ke Yuan et al.
GENOME BIOLOGY (2015)
Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution
Peter Eirew et al.
NATURE (2015)
Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes
Mark D. M. Leiserson et al.
NATURE GENETICS (2015)
Spatially resolved transcriptomics and beyond
Nicola Crosetto et al.
NATURE REVIEWS GENETICS (2015)
Cancer Evolution: Mathematical Models and Computational Inference
Niko Beerenwinkel et al.
SYSTEMATIC BIOLOGY (2015)
CoMEt: a statistical approach to identify combinations of mutually exclusive alterations in cancer
Mark D. M. Leiserson et al.
GENOME BIOLOGY (2015)
Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data
Layla Oesper et al.
BIOINFORMATICS (2014)
Inferring clonal evolution of tumors from single nucleotide somatic mutations
Wei Jiao et al.
BMC BIOINFORMATICS (2014)
Using single cell sequencing data to model the evolutionary history of a tumor
Kyung In Kim et al.
BMC BIOINFORMATICS (2014)
Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing
Marco Gerlinger et al.
NATURE GENETICS (2014)
An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage
Aaron M. Newman et al.
NATURE MEDICINE (2014)
PyClone: statistical inference of clonal population structure in cancer
Andrew Roth et al.
NATURE METHODS (2014)
Inference of Tumor Evolution during Chemotherapy by Computational Modeling and In Situ Analysis of Genetic and Phenotypic Cellular Diversity
Vanessa Almendro et al.
CELL REPORTS (2014)
High-Definition Reconstruction of Clonal Composition in Cancer
Andrej Fischer et al.
CELL REPORTS (2014)
Inferring Clonal Composition from Multiple Sections of a Breast Cancer
Habil Zare et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Modeling Mutual Exclusivity of Cancer Mutations
Ewa Szczurek et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Algorithms to Model Single Gene, Single Chromosome, and Whole Genome Copy Number Changes Jointly in Tumor Phylogenetics
Salim Akhter Chowdhury et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Phylogenetic Quantification of Intra-tumour Heterogeneity
Roland F. Schwarz et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
GoIFISH: a system for the quantification of single cell heterogeneity from IFISH images
Anne Trinh et al.
GENOME BIOLOGY (2014)
Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations
Salim Akhter Chowdhury et al.
BIOINFORMATICS (2013)
Methods and challenges in timing chromosomal abnormalities within cancer samples
Elizabeth Purdom et al.
BIOINFORMATICS (2013)
Mutational heterogeneity in cancer and the search for new cancer-associated genes
Michael S. Lawrence et al.
NATURE (2013)
Computational approaches to identify functional genetic variants in cancer genomes
Abel Gonzalez-Perez et al.
NATURE METHODS (2013)
TrAp: a tree approach for fingerprinting subclonal tumor composition
Francesco Strino et al.
NUCLEIC ACIDS RESEARCH (2013)
Learning Oncogenetic Networks by Reducing to Mixed Integer Linear Programming
Hossein Shahrabi Farahani et al.
PLOS ONE (2013)
Half or more of the somatic mutations in cancers of self-renewing tissues originate prior to tumor initiation
Cristian Tomasetti et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Simultaneous Identification of Multiple Driver Pathways in Cancer
Mark D. M. Leiserson et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Evolutionary dynamics of cancer in response to targeted combination therapy
Ivana Bozic et al.
ELIFE (2013)
Monitoring chronic lymphocytic leukemia progression by whole genome sequencing reveals heterogeneous clonal evolution patterns
Anna Schuh et al.
BLOOD (2012)
Mutational Processes Molding the Genomes of 21 Breast Cancers
Serena Nik-Zainal et al.
CELL (2012)
The Life History of 21 Breast Cancers
Serena Nik-Zainal et al.
CELL (2012)
De novo discovery of mutated driver pathways in cancer
Fabio Vandin et al.
GENOME RESEARCH (2012)
Estimation of rearrangement phylogeny for cancer genomes
Chris D. Greenman et al.
GENOME RESEARCH (2012)
Whole genome sequencing of matched primary and metastatic acral melanomas
Samra Turajlic et al.
GENOME RESEARCH (2012)
The expanding scope of DNA sequencing
Jay Shendure et al.
NATURE BIOTECHNOLOGY (2012)
Integrated analysis of somatic mutations and focal copy-number changes identifies key genes and pathways in hepatocellular carcinoma
Cecile Guichard et al.
NATURE GENETICS (2012)
Evolution of the cancer genome
Lucy R. Yates et al.
NATURE REVIEWS GENETICS (2012)
Reliable detection of subclonal single-nucleotide variants in tumour cell populations
Moritz Gerstung et al.
NATURE COMMUNICATIONS (2012)
Phylogenetic Methods in Biogeography
Fredrik Ronquist et al.
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 42 (2011)
Tumour evolution inferred by single-cell sequencing
Nicholas Navin et al.
NATURE (2011)
Waiting Time Models of Cancer Progression
Moritz Gerstung et al.
MATHEMATICAL POPULATION STUDIES (2010)
A mathematical framework to determine the temporal sequence of somatic genetic events in cancer
Camille Stephan-Otto Attolini et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Role of symmetric and asymmetric division of stem cells in developing drug resistance
Cristian Tomasetti et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Accumulation of driver and passenger mutations during tumor progression
Ivana Bozic et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
A WAITING TIME PROBLEM ARISING FROM THE STUDY OF MULTI-STAGE CARCINOGENESIS
Rick Durrett et al.
ANNALS OF APPLIED PROBABILITY (2009)
Quantifying cancer progression with conjunctive Bayesian networks
Moritz Gerstung et al.
BIOINFORMATICS (2009)
Conjunctive Bayesian networks
Niko Beerenwinkel et al.
BERNOULLI (2007)
Genetic progression and the waiting time to cancer
Niko Beerenwinkel et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Cancer as an evolutionary and ecological process
Lauren M. F. Merlo et al.
NATURE REVIEWS CANCER (2006)
New Probabilistic network models and algorithms for oncogenesis
Marcus Hjelm et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2006)
Evolution of resistance during clonal expansion
Y Iwasa et al.
GENETICS (2006)
Estimating cancer survival and clinical outcome based on genetic tumor progression scores
J Rahnenführer et al.
BIOINFORMATICS (2005)
分享论文
