相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Host Genetic Control of the Microbiota Mediates the Drosophila Nutritional Phenotype
John M. Chaston et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Inoculation of tannin-degrading bacteria into novel hosts increases performance on tannin-rich diets
Kevin D. Kohl et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development
Adam R. Burns et al.
ISME JOURNAL (2016)
The Host Shapes the Gut Microbiota via Fecal MicroRNA
Shirong Liu et al.
CELL HOST & MICROBE (2016)
Host Selection of Microbiota via Differential Adhesion
Kirstie McLoughlin et al.
CELL HOST & MICROBE (2016)
Quantification of cerivastatin toxicity supports organismal performance assays as an effective tool during pharmaceutical safety assessment
Shannon M. Gaukler et al.
EVOLUTIONARY APPLICATIONS (2016)
Ecological robustness of the gut microbiota in response to ingestion of transient food-borne microbes
Chenhong Zhang et al.
ISME JOURNAL (2016)
Cospeciation of gut microbiota with hominids
Andrew H. Moeller et al.
SCIENCE (2016)
Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
Matthew T. Agler et al.
PLOS BIOLOGY (2016)
An optimized approach to germ-free rearing in the jewel wasp Nasonia
J. Dylan Shropshire et al.
PEERJ (2016)
Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes
Kevin R. Theis et al.
MSYSTEMS (2016)
Elucidating the role of the host genome in shaping microbiome composition
Emily R. Davenport
GUT MICROBES (2016)
Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota
Rachel N. Carmody et al.
CELL HOST & MICROBE (2015)
Genetic and environmental control of host-gut microbiota interactions
Elin Org et al.
GENOME RESEARCH (2015)
What Is Peromyscus? Evidence from nuclear and mitochondrial DNA sequences suggests the need for a new classification
Roy N. Platt et al.
JOURNAL OF MAMMALOGY (2015)
Rhythmicity of the intestinal microbiota is regulated by gender and the host circadian clock
Xue Liang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Rethinking heritability of the microbiome
Edward J. van Opstal et al.
SCIENCE (2015)
Xenorhabdus bovienii Strain Diversity Impacts Coevolution and Symbiotic Maintenance with Steinernema spp. Nematode Hosts
Kristen E. Murfin et al.
MBIO (2015)
Analysis of intestinal microbiota in hybrid house mice reveals evolutionary divergence in a vertebrate hologenome
Jun Wang et al.
NATURE COMMUNICATIONS (2015)
Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes
Seth R. Bordenstein et al.
PLOS BIOLOGY (2015)
Intra- and Interindividual Variations Mask Interspecies Variation in the Microbiota of Sympatric Peromyscus Populations
Nielson T. Baxter et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes
Daniel E. Neafsey et al.
SCIENCE (2015)
Host genetic variation impacts microbiome composition across human body sites
Ran Blekhman et al.
GENOME BIOLOGY (2015)
The Cockroach Origin of the Termite Gut Microbiota: Patterns in Bacterial Community Structure Reflect Major Evolutionary Events
Carsten Dietrich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
Insect Gut Bacterial Diversity Determined by Environmental Habitat, Diet, Developmental Stage, and Phylogeny of Host
Ji-Hyun Yun et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Human Genetics Shape the Gut Microbiome
Julia K. Goodrich et al.
CELL (2014)
Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut
Henning Seedorf et al.
CELL (2014)
Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity
Amandine Everard et al.
ISME JOURNAL (2014)
Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes
Jon G. Sanders et al.
MOLECULAR ECOLOGY (2014)
Identifying Keystone Species in the Human Gut Microbiome from Metagenomic Timeseries Using Sparse Linear Regression
Charles K. Fisher et al.
PLOS ONE (2014)
Rapid changes in the gut microbiome during human evolution
Andrew H. Moeller et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Phylogenetic signal in the community structure of host-specific microbiomes of tropical marine sponges
Cole G. Easson et al.
FRONTIERS IN MICROBIOLOGY (2014)
Host lifestyle affects human microbiota on daily timescales
Lawrence A. David et al.
GENOME BIOLOGY (2014)
Biphasic assembly of the murine intestinal microbiota during early development
Ida Gisela Pantoja-Feliciano et al.
ISME JOURNAL (2013)
The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis
Adam C-N Wong et al.
ISME JOURNAL (2013)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
Host Species and Environmental Effects on Bacterial Communities Associated with Drosophila in the Laboratory and in the Natural Environment
Fabian Staubach et al.
PLOS ONE (2013)
Distinct antimicrobial peptide expression determines host species-specific bacterial associations
Soeren Franzenburg et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota
Purna C. Kashyap et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Animals in a bacterial world, a new imperative for the life sciences
Margaret McFall-Ngai et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia
Robert M. Brucker et al.
SCIENCE (2013)
Mom Knows Best: The Universality of Maternal Microbial Transmission
Lisa J. Funkhouser et al.
PLOS BIOLOGY (2013)
Gut Immune Maturation Depends on Colonization with a Host-Specific Microbiota
Hachung Chung et al.
CELL (2012)
THE ROLES OF HOST EVOLUTIONARY RELATIONSHIPS (GENUS: NASONIA) AND DEVELOPMENT IN STRUCTURING MICROBIAL COMMUNITIES
Robert M. Brucker et al.
EVOLUTION (2012)
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
Daniel McDonald et al.
ISME JOURNAL (2012)
Microbiome analysis among bats describes influences of host phylogeny, life history, physiology and geography
Caleb D. Phillips et al.
MOLECULAR ECOLOGY (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
The Application of Ecological Theory Toward an Understanding of the Human Microbiome
Elizabeth K. Costello et al.
SCIENCE (2012)
Speciation by symbiosis
Robert M. Brucker et al.
TRENDS IN ECOLOGY & EVOLUTION (2012)
A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals
Rosanna A. Alegado et al.
ELIFE (2012)
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
Daniel McDonald et al.
GIGASCIENCE (2012)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
Python for Scientists and Engineers
K. Jarrod Millman et al.
COMPUTING IN SCIENCE & ENGINEERING (2011)
Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
Brian D. Muegge et al.
SCIENCE (2011)
Drosophila Microbiome Modulates Host Developmental and Metabolic Homeostasis via Insulin Signaling
Seung Chul Shin et al.
SCIENCE (2011)
Bacterial Communities of Diverse Drosophila Species: Ecological Context of a Host-Microbe Model System
James Angus Chandler et al.
PLOS GENETICS (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Intestinal alkaline phosphatase preserves the normal homeostasis of gut microbiota
M. S. Malo et al.
GUT (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species
John H. Werren et al.
SCIENCE (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities
Howard Ochman et al.
PLOS BIOLOGY (2010)
The evolution of burrowing behaviour in deer mice (genus Peromyscus)
Jesse N. Weber et al.
ANIMAL BEHAVIOUR (2009)
Strain-specific priming of resistance in the red flour beetle, Tribolium castaneum
Olivia Roth et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)
Quantifying Adaptive Evolution in the Drosophila Immune System
Darren J. Obbard et al.
PLOS GENETICS (2009)
Grammar-based distance in progressive multiple sequence alignment
David J. Russell et al.
BMC BIOINFORMATICS (2008)
Evolution of mammals and their gut microbes
Ruth E. Ley et al.
SCIENCE (2008)
Evolution of genes and genomes on the Drosophila phylogeny
Andrew G. Clark et al.
NATURE (2007)
Long-term maintenance of species-specific bacterial microbiota in the basal metazoan Hydra
Sebastian Fraune et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Python for scientific computing
Travis E. Oliphant
COMPUTING IN SCIENCE & ENGINEERING (2007)
Integration of biological networks and gene expression data using Cytoscape
Melissa S. Cline et al.
NATURE PROTOCOLS (2007)
Vertical transmission of diverse microbes in the tropical sponge Corticium sp.
Koty H. Sharp et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Primate molecular divergence dates
Michael E. Steiper et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2006)
Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection
John F. Rawls et al.
CELL (2006)
UniFrac: a new phylogenetic method for comparing microbial communities
C Lozupone et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)
A scan for positively selected genes in the genomes of humans and chimpanzees
R Nielsen et al.
PLOS BIOLOGY (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes
SJ Steppan et al.
SYSTEMATIC BIOLOGY (2004)
Host-symbiont recognition in the environmentally transmitted sepiolid squid-Vibrio mutualism
MK Nishiguchi
MICROBIAL ECOLOGY (2002)
How many Wolbachia supergroups exist?
N Lo et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Glycans as legislators of host-microbial interactions: spanning the spectrum from symbiosis to pathogenicity
LV Hooper et al.
GLYCOBIOLOGY (2001)