相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Fast gap-affine pairwise alignment using the wavefront algorithm
Santiago Marco-Sola et al.
BIOINFORMATICS (2021)
The Need for a Human Pangenome Reference Sequence
Karen H. Miga et al.
Annual Review of Genomics and Human Genetics (2021)
Sequencing of human genomes with nanopore technology
Rory Bowden et al.
NATURE COMMUNICATIONS (2019)
Generic accelerated sequence alignment in SeqAn using vectorization and multi-threading
Rene Rahn et al.
BIOINFORMATICS (2018)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Introducing difference recurrence relations for faster semi-global alignment of long sequences
Hajime Suzuki et al.
BMC BIOINFORMATICS (2018)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
Edlib: a C/C plus plus library for fast, exact sequence alignment using edit distance
Martin Sosic et al.
BIOINFORMATICS (2017)
ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data
Bernardo Rodriguez-Martin et al.
BMC GENOMICS (2017)
Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments
Jeff Daily
BMC BIOINFORMATICS (2016)
A work stealing based approach for enabling scalable optimal sequence homology detection
Jeff Daily et al.
JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING (2015)
BitPAl: a bit-parallel, general integer-scoring sequence alignment algorithm
Joshua Loving et al.
BIOINFORMATICS (2014)
SSW Library: An SIMD Smith-Waterman C/C plus plus Library for Use in Genomic Applications
Mengyao Zhao et al.
PLOS ONE (2013)
The GEM mapper: fast, accurate and versatile alignment by filtration
Santiago Marco-Sola et al.
NATURE METHODS (2012)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
ABySS: A parallel assembler for short read sequence data
Jared T. Simpson et al.
GENOME RESEARCH (2009)
Striped Smith-Waterman speeds database searches six times over other SIMD implementations
Michael Farrar
BIOINFORMATICS (2007)
Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors
T Rognes et al.
BIOINFORMATICS (2000)
A greedy algorithm for aligning DNA sequences
Z Zhang et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2000)