相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Shortcuts to Thermodynamic Computing: The Cost of Fast and Faithful Information Processing
Alexander B. Boyd et al.
JOURNAL OF STATISTICAL PHYSICS (2022)
Dynamical differential covariance recovers directional network structure in multiscale neural systems
Yusi Chen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)
Emergence of dynamic properties in network hypermotifs
Miri Adler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)
Influence maximization in Boolean networks
Thomas Parmer et al.
NATURE COMMUNICATIONS (2022)
Thermodynamic role of main reaction pathway and multi-body information flow in membrane transport
Satoshi Yoshida et al.
PHYSICAL REVIEW RESEARCH (2022)
Relationship between Schreiber's transfer entropy and Liang-Kleeman information flow from the perspective of stochastic thermodynamics
Hirohito Kiwata
PHYSICAL REVIEW E (2022)
Motif structure for the four subgroups within the suprachiasmatic nuclei affects its entrainment ability
Wenxin Zheng et al.
PHYSICAL REVIEW E (2022)
Systematic analysis of noise reduction properties of coupled and isolated feed-forward loops
Suchana M. Chakravarty et al.
PLOS COMPUTATIONAL BIOLOGY (2021)
Capturing dynamic relevance in Boolean networks using graph theoretical measures
Felix M. Weidner et al.
BIOINFORMATICS (2021)
Nonlinear delay differential equations and their application to modeling biological network motifs
David S. Glass et al.
NATURE COMMUNICATIONS (2021)
Deriving pairwise transfer entropy from network structure and motifs
Leonardo Novelli et al.
PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES (2020)
Diagrammatic expansion of information flows in stochastic Boolean networks
Fumito Mori et al.
PHYSICAL REVIEW RESEARCH (2020)
Topological features determining the error in the inference of networks using transfer entropy
Roy H. Goodman et al.
MATHEMATICS IN ENGINEERING (2020)
Network motifs and their origins
Lewi Stone et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
What network motifs tell us about resilience and reliability of complex networks
Asim K. Dey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Information thermodynamics for interacting stochastic systems without bipartite structure
R. Chetrite et al.
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2019)
Maximizing local information transfer in Boolean networks
T. Haruna et al.
NEW JOURNAL OF PHYSICS (2018)
Identification of Biologically Essential Nodes via Determinative Power in Logical Models of Cellular Processes
Trevor Pentzien et al.
FRONTIERS IN PHYSIOLOGY (2018)
Interactions of information transfer along separable causal paths
Peishi Jiang et al.
PHYSICAL REVIEW E (2018)
Information Flow in a Model of Policy Diffusion: An Analytical Study
Maurizio Porfiri et al.
IEEE TRANSACTIONS ON NETWORK SCIENCE AND ENGINEERING (2018)
Stochastic thermodynamics of a chemical nanomachine: The channeling enzyme tryptophan synthase
Dimitri Loutchko et al.
JOURNAL OF CHEMICAL PHYSICS (2017)
What we learn from the learning rate
Rory A. Brittain et al.
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2017)
A new discrete dynamic model of ABA-induced stomatal closure predicts key feedback loops
Reka Albert et al.
PLOS BIOLOGY (2017)
Multisensory integration in C. elegans
D. Dipon Ghosh et al.
CURRENT OPINION IN NEUROBIOLOGY (2017)
Logical Reduction of Biological Networks to Their Most Determinative Components
Mihaela T. Matache et al.
BULLETIN OF MATHEMATICAL BIOLOGY (2016)
Multipartite information flow for multiple Maxwell demons
Jordan M. Horowitz
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2015)
Quantifying information transfer and mediation along causal pathways in complex systems
Jakob Runge
PHYSICAL REVIEW E (2015)
Canalizing Boolean Functions Maximize Mutual Information
Johannes Georg Klotz et al.
IEEE TRANSACTIONS ON INFORMATION THEORY (2014)
Unifying Three Perspectives on Information Processing in Stochastic Thermodynamics
A. C. Barato et al.
PHYSICAL REVIEW LETTERS (2014)
Thermodynamics with Continuous Information Flow
Jordan M. Horowitz et al.
PHYSICAL REVIEW X (2014)
Information Thermodynamics on Causal Networks
Sosuke Ito et al.
PHYSICAL REVIEW LETTERS (2013)
Harmonic analysis of Boolean networks: determinative power and perturbations
Reinhard Heckel et al.
EURASIP JOURNAL ON BIOINFORMATICS AND SYSTEMS BIOLOGY (2013)
Switching between oscillations and homeostasis in competing negative and positive feedback motifs
Weihan Li et al.
JOURNAL OF THEORETICAL BIOLOGY (2012)
Escaping the Curse of Dimensionality in Estimating Multivariate Transfer Entropy
Jakob Runge et al.
PHYSICAL REVIEW LETTERS (2012)
Feedback regulation of EGFR signalling: decision making by early and delayed loops
Roi Avraham et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2011)
Equalities and Inequalities: Irreversibility and the Second Law of Thermodynamics at the Nanoscale
Christopher Jarzynski
ANNUAL REVIEW OF CONDENSED MATTER PHYSICS, VOL 2 (2011)
Functional Motifs in Biochemical Reaction Networks
John J. Tyson et al.
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 61 (2010)
Neuronal couplings between retinal ganglion cells inferred by efficient inverse statistical physics methods
Simona Cocco et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Mutual information in random Boolean models of regulatory networks
Andre S. Ribeiro et al.
PHYSICAL REVIEW E (2008)
Network motifs: theory and experimental approaches
Uri Alon
NATURE REVIEWS GENETICS (2007)
Measures for information propagation in Boolean networks
Pauli Ramo et al.
PHYSICA D-NONLINEAR PHENOMENA (2007)
Weak pairwise correlations imply strongly correlated network states in a neural population
E Schneidman et al.
NATURE (2006)
Tracking perturbations in Boolean networks with spectral methods -: art. no. 026137
J Kesseli et al.
PHYSICAL REVIEW E (2005)
On spectral techniques in analysis of Boolean networks
J Kesseli et al.
PHYSICA D-NONLINEAR PHENOMENA (2005)
Multistability in the lactose utilization network of Escherichia coli
EM Ozbudak et al.
NATURE (2004)
Search for computational modules in the C. elegans brain
Markus Reigl et al.
BMC BIOLOGY (2004)
The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks
S Mangan et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Structure and function of the feed-forward loop network motif
S Mangan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Modeling transcriptional regulatory networks
H Bolouri et al.
BIOESSAYS (2002)
Network motifs: Simple building blocks of complex networks
R Milo et al.
SCIENCE (2002)
Untangling the ErbB signalling network
Y Yarden et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2001)
Measuring information transfer
T Schreiber
PHYSICAL REVIEW LETTERS (2000)
A synthetic oscillatory network of transcriptional regulators
MB Elowitz et al.
NATURE (2000)