期刊
ECOLOGY AND EVOLUTION
卷 6, 期 11, 页码 3632-3644出版社
WILEY
DOI: 10.1002/ece3.2110
关键词
assignment tests; FST outlier; population structure; RAD-seq; SNP discovery
资金
- CONICYT
- FONDECYT [1130302]
Chilean mussel populations have been thought to be panmictic with limited genetic structure. Genotyping-by-sequencing approaches have enabled investigation of genomewide variation that may better distinguish populations that have evolved in different environments. We investigated neutral and adaptive genetic variation in Mytilus from six locations in southern Chile with 1240 SNPs obtained with RAD-seq. Differentiation among locations with 891 neutral SNPs was low (F-ST = 0.005). Higher differentiation was obtained with a panel of 58 putative outlier SNPs (F-ST = 0.114) indicating the potential for local adaptation. This panel identified clusters of genetically related individuals and demonstrated that much of the differentiation (similar to 92%) could be attributed to the three major regions and environments: extreme conditions in Patagonia, inner bay influenced by aquaculture (Reloncavi), and outer bay (Chiloe Island). Patagonia samples were most distinct, but additional analysis carried out excluding this collection also revealed adaptive divergence between inner and outer bay samples. The four locations within Reloncavi area were most similar with all panels of markers, likely due to similar environments, high gene flow by aquaculture practices, and low geographical distance. Our results and the SNP markers developed will be a powerful tool supporting management and programs of this harvested species.
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