相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Deciphering the Spectral Tuning Mechanism in Proteorhodopsin: The Dominant Role of Electrostatics Instead of Chromophore Geometry
Jonathan R. Church et al.
CHEMISTRY-A EUROPEAN JOURNAL (2022)
The Impact of Retinal Configuration on the Protein-Chromophore Interactions in Bistable Jumping Spider Rhodopsin-1
Jonathan R. Church et al.
MOLECULES (2022)
Electronic Couplings and Electrostatic Interactions Behind the Light Absorption of Retinal Proteins
Kazuhiro J. Fujimoto
FRONTIERS IN MOLECULAR BIOSCIENCES (2021)
Hybrid QM/classical models: Methodological advances and new applications
Filippo Lipparini et al.
CHEMICAL PHYSICS REVIEWS (2021)
Red, Orange, Green: Light- and Temperature-Dependent Color Tuning in a Cyanobacteriochrome
David Buhrke et al.
BIOCHEMISTRY (2020)
Cost-Effective Potential for Accurate Polarizable Embedding Calculations in Protein Environments
Peter Reinholdt et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2020)
Structural elements regulating the photochromicity in a cyanobacteriochrome
Xiuling Xu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
NeoR, a near-infrared absorbing rhodopsin
Matthias Broser et al.
NATURE COMMUNICATIONS (2020)
Polarizable embedding QM/MM: the future gold standard for complex (bio)systems?
Mattia Bondanza et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2020)
Response properties of embedded molecules through the polarizable embedding model
Casper Steinmann et al.
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY (2019)
The Two-Photon Reversible Reaction of the Bistable Jumping Spider Rhodopsin-1
David Ehrenberg et al.
BIOPHYSICAL JOURNAL (2019)
QM/MM Benchmarking of Cyanobacteriochrome Slr1393g3 Absorption Spectra
Christian Wiebeler et al.
MOLECULES (2019)
Crystal structure of jumping spider rhodopsin-1 as a light sensitive GPCR
Niranjan Varma et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
The Effective Conjugation Length Is Responsible for the Red/Green Spectral Tuning in the Cyanobacteriochrome Slr1393g3
Christian Wiebeler et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2019)
Understanding Colour Tuning Rules and Predicting Absorption Wavelengths of Microbial Rhodopsins by Data-Driven Machine-Learning Approach
Masayuki Karasuyama et al.
SCIENTIFIC REPORTS (2018)
Counterion-controlled spectral tuning of the protonated Schiff-base retinal
Yoni Toker et al.
PHYSICAL REVIEW A (2018)
An Averaged Polarizable Potential for Multiscale Modeling in Phospholipid Membranes
Sarah Witzke et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2017)
Averaged Solvent Embedding Potential Parameters for Multiscale Modeling of Molecular Properties
Maarten T. P. Beerepoot et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2016)
Extension of the Effective Fragment Potential Method to Macromolecules
Pradeep Kumar Gurunathan et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2016)
Electrostatic versus Resonance Interactions in Photoreceptor Proteins: The Case of Rhodopsin
Riccardo Guareschi et al.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2016)
Detailed insight into the ultrafast photoconversion of the cyanobacteriochrome Slr1393 from Synechocystis sp.
Chavdar Slavov et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2015)
Mixed Quantum Mechanical/Molecular Mechanical Molecular Dynamics Simulations of Biological Systems in Ground and Electronically Excited States
Elizabeth Brunk et al.
CHEMICAL REVIEWS (2015)
Accuracy of Protein Embedding Potentials: An Analysis in Terms of Electrostatic Potentials
Jogvan Magnus Haugaard Olsen et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
James A. Maier et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
Birth and Future of Multiscale Modeling for Macromolecular Systems (Nobel Lecture)
Michael Levitt
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2014)
Development of Multiscale Models for Complex Chemical Systems: From H+H2 to Biomolecules (Nobel Lecture)
Martin Karplus
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2014)
Multiscale Modeling of Biological Functions: From Enzymes to Molecular Machines (Nobel Lecture)
Arieh Warshel
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2014)
The Dalton quantum chemistry program system
Kestutis Aidas et al.
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE (2014)
Cross-protomer interaction with the photoactive site in oligomeric proteorhodopsin complexes
Tingting Ran et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2013)
From channelrhodopsins to optogenetics
Peter Hegemann et al.
EMBO MOLECULAR MEDICINE (2013)
Thiol-Based Photocycle of the Blue and Teal Light-Sensing Cyanobacteriochrome Tlr1999
Gen Enomoto et al.
BIOCHEMISTRY (2012)
Phycoviolobilin Formation and Spectral Tuning in the DXCF Cyanobacteriochrome Subfamily
Nathan C. Rockwell et al.
BIOCHEMISTRY (2012)
Linear Response Theory and Electronic Transition Energies for a Fully Polarizable QM/Classical Hamiltonian
Filippo Lipparini et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Tuning the Electronic Absorption of Protein-Embedded All-trans-Retinal
Wenjing Wang et al.
SCIENCE (2012)
Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes
Nathan C. Rockwell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Excited States in Solution through Polarizable Embedding
Jogvan Magnus Olsen et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2010)
QM/MM Methods for Biomolecular Systems
Hans Martin Senn et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)
Cyanobacteriochromes: a new superfamily of tetrapyrrole-binding photoreceptors in cyanobacteria
Masahiko Ikeuchi et al.
PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES (2008)
Theoretical studies on the color-tuning mechanism in retinal proteins
Kazuhiro Fujimoto et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2007)
The Amber biomolecular simulation programs
DA Case et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)
Photoreceptor proteins, star actors of modern times: A review of the functional dynamics in the structure of representative members of six different photoreceptor families
MA Van der Horst et al.
ACCOUNTS OF CHEMICAL RESEARCH (2004)
Proteorhodopsin phototrophy in the ocean
O Béjà et al.
NATURE (2001)
分享论文
