相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。SMART: recent updates, new developments and status in 2020
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2021)
Proteome-Scale Detection of Differential Conservation Patterns at Protein and Subprotein Levels with BLUR
Audrey Defosset et al.
GENOME BIOLOGY AND EVOLUTION (2021)
The Gene Ontology resource: enriching a GOld mine
Seth Carbon et al.
NUCLEIC ACIDS RESEARCH (2021)
GenBank
Eric W. Sayers et al.
NUCLEIC ACIDS RESEARCH (2021)
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale
Carlos P. Cantalapiedra et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
The InterPro protein families and domains database: 20 years on
Matthias Blum et al.
NUCLEIC ACIDS RESEARCH (2021)
Pfam: The protein families database in 2021
Jaina Mistry et al.
NUCLEIC ACIDS RESEARCH (2021)
Genomes OnLine Database (GOLD) v.8: overview and updates
Supratim Mukherjee et al.
NUCLEIC ACIDS RESEARCH (2021)
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP plus and AUGUSTUS supported by a protein database
Tomas Bruna et al.
NAR GENOMICS AND BIOINFORMATICS (2021)
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
Takuya Aramaki et al.
BIOINFORMATICS (2020)
CDD/SPARCLE: the conserved domain database in 2020
Shennan Lu et al.
NUCLEIC ACIDS RESEARCH (2020)
The Quest for Orthologs benchmark service and consensus calls in 2020
Adrian M. Altenhoff et al.
NUCLEIC ACIDS RESEARCH (2020)
OMA standalone: orthology inference among public and custom genomes and transcriptomes
Adrian M. Altenhoff et al.
GENOME RESEARCH (2019)
Advances and Applications in the Quest for Orthologs
Natasha Glover et al.
MOLECULAR BIOLOGY AND EVOLUTION (2019)
cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly
T. E. Lewis et al.
BIOINFORMATICS (2019)
PhyloProfile: dynamic visualization and exploration of multi-layered phylogenetic profiles
Ngoc-Vinh Tran et al.
BIOINFORMATICS (2018)
HMMER web server: 2018 update
Simon C. Potter et al.
NUCLEIC ACIDS RESEARCH (2018)
Earth BioGenome Project: Sequencing life for the future of life
Harris A. Lewin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
Martin Steinegger et al.
NATURE BIOTECHNOLOGY (2017)
fLPS: Fast discovery of compositional biases for the protein universe
Paul M. Harrison
BMC BIOINFORMATICS (2017)
Ensembl 2016
Andrew Yates et al.
NUCLEIC ACIDS RESEARCH (2016)
UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB
Tunca Dogan et al.
BIOINFORMATICS (2016)
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
Minoru Kanehisa et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
Proteins with Highly Evolvable Domain Architectures Are Nonessential but Highly Retained
Chia-Hsin Hsu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
HAMAP in 2015: updates to the protein family classification and annotation system
Ivo Pedruzzi et al.
NUCLEIC ACIDS RESEARCH (2015)
InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic
Erik L. L. Sonnhammer et al.
NUCLEIC ACIDS RESEARCH (2015)
DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins
Andrew D. Moore et al.
BIOINFORMATICS (2014)
Functional and evolutionary implications of gene orthology
Toni Gabaldon et al.
NATURE REVIEWS GENETICS (2013)
Toward community standards in the quest for orthologs
Christophe Dessimoz et al.
BIOINFORMATICS (2012)
Protein domain recurrence and order can enhance prediction of protein functions
Mario Abdel Messih et al.
BIOINFORMATICS (2012)
The GH18 family of chitinases: Their domain architectures, functions and evolutions
Qian-Sheng Huang et al.
GLYCOBIOLOGY (2012)
On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report
Paul D. Thomas et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
A fast and automated solution for accurately resolving protein domain architectures
Corin Yeats et al.
BIOINFORMATICS (2010)
FACT: Functional annotation transfer between proteins with similar feature architectures
Tina Koestler et al.
BMC BIOINFORMATICS (2010)
Getting Started in Gene Orthology and Functional Analysis
Gang Fang et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Protein comparison at the domain architecture level
Byungwook Lee et al.
BMC BIOINFORMATICS (2009)
Protein domain organisation: adding order
Sarah K. Kummerfeld et al.
BMC BIOINFORMATICS (2009)
Structures of yeast glutathione-S-transferase Gtt2 reveal a new catalytic type of GST family
Xiao-Xiao Ma et al.
EMBO REPORTS (2009)
The Cdc42 Effectors Ste20, Cla4, and Skm1 Down-Regulate the Expression of Genes Involved in Sterol Uptake by a Mitogen-activated Protein Kinase-independent Pathway
Meng Lin et al.
MOLECULAR BIOLOGY OF THE CELL (2009)
Spatiotemporal Regulation of Chloride Intracellular Channel Protein CLIC4 by RhoA
Bas Ponsioen et al.
MOLECULAR BIOLOGY OF THE CELL (2009)
Predicting protein function from domain content
Kristoffer Forslund et al.
BIOINFORMATICS (2008)
Domain architecture comparison for multidomain homology identification
N. Song et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2007)
The generation of new protein functions by the combination of domains
Matthew Bashton et al.
STRUCTURE (2007)
An initial strategy for comparing proteins at the domain architecture level
Kui Lin et al.
BIOINFORMATICS (2006)
A new measure for functional similarity of gene products based on Gene Ontology
Andreas Schlicker et al.
BMC BIOINFORMATICS (2006)
Crystal structure of the soluble form of the redox-regulated chloride ion channel protein CLIC4
DR Littler et al.
FEBS JOURNAL (2005)
CDART: Protein homology by domain architecture
LY Geer et al.
GENOME RESEARCH (2002)
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
A Krogh et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
分享论文
