相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Synergy and regulation of antiphage systems: toward the existence of a bacterial immune system?
Florian Tesson et al.
CURRENT OPINION IN MICROBIOLOGY (2023)
Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes
Xiaoxuan Zheng et al.
ISME JOURNAL (2022)
GenBank
Eric W. Sayers et al.
NUCLEIC ACIDS RESEARCH (2022)
Phages and their satellites encode hotspots of antiviral systems
Francois Rousset et al.
CELL HOST & MICROBE (2022)
Life and death in the soil microbiome: how ecological processes influence biogeochemistry
Noah W. Sokol et al.
NATURE REVIEWS MICROBIOLOGY (2022)
A snapshot of the global drinking water virome: Diversity and metabolic potential vary with residual disinfectant use
Bridget Hegarty et al.
WATER RESEARCH (2022)
Systematic and quantitative view of the antiviral arsenal of prokaryotes
Florian Tesson et al.
NATURE COMMUNICATIONS (2022)
Phage-bacterial contig association prediction with a convolutional neural network
Tianqi Tang et al.
BIOINFORMATICS (2022)
CheckV assesses the quality and completeness of metagenome-assembled viral genomes
Stephen Nayfach et al.
NATURE BIOTECHNOLOGY (2021)
Massive expansion of human gut bacteriophage diversity
Luis F. Camarillo-Guerrero et al.
CELL (2021)
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Jiarong Guo et al.
MICROBIOME (2021)
SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts
Ruoshi Zhang et al.
BIOINFORMATICS (2021)
Coevolution between bacterial CRISPR-Cas systems and their bacteriophages
Bridget N. J. Watson et al.
CELL HOST & MICROBE (2021)
Reciprocal transcription factor networks govern tissue-resident ILC3 subset function and identity
Remi Fiancette et al.
NATURE IMMUNOLOGY (2021)
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
Patricia P. Chan et al.
NUCLEIC ACIDS RESEARCH (2021)
Ecological Approach to Understanding Superinfection Inhibition in Bacteriophage
Karin R. H. Biggs et al.
VIRUSES-BASEL (2021)
DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
Shufang Wu et al.
GIGASCIENCE (2021)
Enhanced mutualistic symbiosis between soil phages and bacteria with elevated chromium-induced environmental stress
Dan Huang et al.
MICROBIOME (2021)
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
Simon Roux et al.
NUCLEIC ACIDS RESEARCH (2021)
Disinfection exhibits systematic impacts on the drinking water microbiome
Zihan Dai et al.
MICROBIOME (2020)
VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences
Kristopher Kieft et al.
MICROBIOME (2020)
DRAM for distilling microbial metabolism to automate the curation of microbiome function
Michael Shaffer et al.
NUCLEIC ACIDS RESEARCH (2020)
CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci
Jakob Russel et al.
CRISPR JOURNAL (2020)
Bioinformatic evidence of widespread priming in type I and II CRISPR-Cas systems
Thomas J. Nicholson et al.
RNA BIOLOGY (2019)
Host-hijacking and planktonic piracy: how phages command the microbial high seas
Joanna Warwick-Dugdale et al.
VIROLOGY JOURNAL (2019)
Cas9 Cleavage of Viral Genomes Primes the Acquisition of New Immunological Memories
Philip M. Nussenzweig et al.
CELL HOST & MICROBE (2019)
Bacteriophage-host arm race: an update on the mechanism of phage resistance in bacteria and revenge of the phage with the perspective for phage therapy
Aa Haeruman Azam et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2019)
The microbial nitrogen-cycling network
Marcel M. M. Kuypers et al.
NATURE REVIEWS MICROBIOLOGY (2018)
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
David Couvin et al.
NUCLEIC ACIDS RESEARCH (2018)
Systematic discovery of antiphage defense systems in the microbial pangenome
Shany Doron et al.
SCIENCE (2018)
Bacteriophage-based weapons for the war against foodborne pathogens
Lawrence Goodridge et al.
CURRENT OPINION IN FOOD SCIENCE (2018)
Biosynthesis and Function of Modified Bases in Bacteria and Their Viruses
Peter Weigele et al.
CHEMICAL REVIEWS (2016)
How mutualisms arise in phytoplankton communities: building eco-evolutionary principles for aquatic microbes
Elena Kazamia et al.
ECOLOGY LETTERS (2016)
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices
Dinghua Li et al.
METHODS (2016)
Role of restriction-modification systems in prokaryotic evolution and ecology
A. S. Ershova et al.
BIOCHEMISTRY-MOSCOW (2015)
A new perspective on lysogeny: prophages as active regulatory switches of bacteria
Ron Feiner et al.
NATURE REVIEWS MICROBIOLOGY (2015)
Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology
James I. Prosser
NATURE REVIEWS MICROBIOLOGY (2015)
Combining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome
Shirley Bikel et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
The other face of restriction: modification-dependent enzymes
Wil A. M. Loenen et al.
NUCLEIC ACIDS RESEARCH (2014)
Type III restriction endonucleases are heterotrimeric: comprising one helicase-nuclease subunit and a dimeric methyltransferase that binds only one specific DNA
Annika Butterer et al.
NUCLEIC ACIDS RESEARCH (2014)
Type II restriction endonucleases-a historical perspective and more
Alfred Pingoud et al.
NUCLEIC ACIDS RESEARCH (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
Bacterial Community Structure in the Drinking Water Microbiome Is Governed by Filtration Processes
Ameet J. Pinto et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2012)
The phage-host arms race: Shaping the evolution of microbes
Adi Stern et al.
BIOESSAYS (2011)
The good viruses: viral mutualistic symbioses
Marilyn J. Roossinck
NATURE REVIEWS MICROBIOLOGY (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Practical evaluation of iron corrosion control in a drinking water distribution system
C Volk et al.
WATER RESEARCH (2000)