4.7 Article

Residue Geometry Networks: A Rigidity-Based Approach to the Amino Acid Network and Evolutionary Rate Analysis

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Universal allosteric mechanism for Gα activation by GPCRs

Tilman Flock et al.

NATURE (2015)

Review Biochemistry & Molecular Biology

The construction of an amino acid network for understanding protein structure and function

Wenying Yan et al.

AMINO ACIDS (2014)

Article Pharmacology & Pharmacy

Impact of intracellular domain flexibility upon properties of activated human 5-HT3 receptors

J. L. Kozuska et al.

BRITISH JOURNAL OF PHARMACOLOGY (2014)

Review Biochemistry & Molecular Biology

Amino Acid Network for the Discrimination of Native Protein Structures from Decoys

Jianhong Zhou et al.

CURRENT PROTEIN & PEPTIDE SCIENCE (2014)

Article Biochemical Research Methods

Constrained geometric simulation of the nicotinic acetylcholine receptor

William J. Belfield et al.

JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2014)

Article Evolutionary Biology

Structural dynamics flexibility informs function and evolution at a proteome scale

Zeynep Nevin Gerek et al.

EVOLUTIONARY APPLICATIONS (2013)

Article Biochemistry & Molecular Biology

Sequence Evolution Correlates with Structural Dynamics

Ying Liu et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Chemistry, Multidisciplinary

Why are the low-energy protein normal modes evolutionarily conserved?

Julian Echave

PURE AND APPLIED CHEMISTRY (2012)

Article Biochemical Research Methods

Modeling allosteric signal propagation using protein structure networks

Keunwan Park et al.

BMC BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Molecular Characterization of a Novel Geranylgeranyl Pyrophosphate Synthase from Plasmodium Parasites

Jennifer D. Artz et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

Article Biochemistry & Molecular Biology

Structural Determinants of Protein Evolution Are Context-Sensitive at the Residue Level

Eric A. Franzosa et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Biochemistry & Molecular Biology

The role of dynamic conformational ensembles in biomolecular recognition

David D. Boehr et al.

NATURE CHEMICAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Helix movement is coupled to displacement of the second extracellular loop in rhodopsin activation

Shivani Ahuja et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)

Review Biochemistry & Molecular Biology

Allosteric regulation and catalysis emerge via a common route

Nina M. Goodey et al.

NATURE CHEMICAL BIOLOGY (2008)

Article Biochemistry & Molecular Biology

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

Ian W. Davis et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemical Research Methods

Bio3d: an R package for the comparative analysis of protein structures

Barry J. Grant et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

The crystal structure of human geranylgeranyl pyrophosphate synthase reveals a novel hexameric arrangement and inhibitory product binding

Kathryn L. Kavanagh et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Chemistry, Multidisciplinary

Docking of photosystem I subunit C using a constrained geometric simulation

Craig C. Jolley et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Article Biochemistry & Molecular Biology

Identification of domains and domain interface residues in multidomain proteins from graph spectral method

RK Sistla et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

Uncovering network systems within protein structures

LH Greene et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)