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scNanoHi-C uncovers single-cell high-order chromatin structures and gene regulation

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NATURE METHODS
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NATURE PORTFOLIO
DOI: 10.1038/s41592-023-01979-9

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Leveraging nanopore long-read sequencing, scNanoHi-C uses a single-cell approach to identify multiway interactions between enhancers and target promoters, enabling investigation of heterogeneities of single-cell gene regulation networks mediated by high-order 3D chromatin structures.
Leveraging nanopore long-read sequencing, scNanoHi-C identifies multiway interactions between enhancers and their target promoters within a single cell. Compared with short-read-based single-cell Hi-C or population-based multiway sequencing methods, scNanoHi-C offers new opportunities to investigate the heterogeneities of single-cell gene regulation networks mediated by high-order 3D chromatin structures.

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