相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Transport domain unlocking sets the uptake rate of an aspartate transporter
Nurunisa Akyuz et al.
NATURE (2015)
Crystal structure of a phosphorylation-coupled vitamin C transporter
Ping Luo et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Crystal structure of the Alcanivorax borkumensis YdaH transporter reveals an unusual topology
Jani Reddy Bolla et al.
NATURE COMMUNICATIONS (2015)
Crystal structure of a phosphorylation-coupled vitamin C transporter
Ping Luo et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Structure and Function of Neisseria gonorrhoeae MtrF Illuminates a Class of Antimetabolite Efflux Pumps
Chih-Chia Su et al.
CELL REPORTS (2015)
MemStar: A one-shot Escherichia coli-based approach for high-level bacterial membrane protein production
Chiara Lee et al.
FEBS LETTERS (2014)
Species differences in bacterial NhaA Na+/H+ exchangers
Octavian Calinescu et al.
FEBS LETTERS (2014)
Keeping It Simple, Transport Mechanism and pH Regulation in Na +/H + Exchangers
Octavian Calinescu et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2014)
Crystal structure of the sodium-proton antiporter NhaA dimer and new mechanistic insights
Chiara Lee et al.
JOURNAL OF GENERAL PHYSIOLOGY (2014)
Structural basis of the alternating-access mechanism in a bile acid transporter
Xiaoming Zhou et al.
NATURE (2014)
Traditional and emerging roles for the SLC9 Na+/H+ exchangers
Daniel G. Fuster et al.
PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY (2014)
How good are my data and what is the resolution?
Philip R. Evans et al.
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2013)
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
Sander Pronk et al.
BIOINFORMATICS (2013)
Conformational changes in NhaA Na+/H+ antiporter
Lena Kozachkov et al.
MOLECULAR MEMBRANE BIOLOGY (2013)
A two-domain elevator mechanism for sodium/proton antiport
Chiara Lee et al.
NATURE (2013)
The Unwound Portion Dividing Helix IV of NhaA Undergoes a Conformational Change at Physiological pH and Lines the Cation Passage
Abraham Rimon et al.
BIOCHEMISTRY (2012)
Bendix: intuitive helix geometry analysis and abstraction
Anna Caroline E. Dahl et al.
BIOINFORMATICS (2012)
Revealing the Ligand Binding Site of NhaA Na+/H+ Antiporter and Its pH Dependence
Michal Maes et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Molecular Dynamics Simulations of Phosphatidylcholine Membranes: A Comparative Force Field Study
Thomas J. Piggot et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone φ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
Robert B. Best et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Crystal structure of a concentrative nucleoside transporter from Vibrio cholerae at 2.4 Å
Zachary Lee Johnson et al.
NATURE (2012)
Transport Mechanism and pH Regulation of the Na+/H+ Antiporter NhaA from Escherichia coli AN ELECTROPHYSIOLOGICAL STUDY
Thomas Mager et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
From Coarse Grained to Atomistic: A Serial Multiscale Approach to Membrane Protein Simulations
Phillip J. Stansfeld et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)
Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pKa Values
Chresten R. Sondergaard et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)
Software News and Updates MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations
Naveen Michaud-Agrawal et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2011)
Crystal structure of a bacterial homologue of the bile acid sodium symporter ASBT
Nien-Jen Hu et al.
NATURE (2011)
Crystal structure of a phosphorylation-coupled saccharide transporter
Yu Cao et al.
NATURE (2011)
Site-directed tryptophan fluorescence reveals two essential conformational changes in the Na+/H+ antiporter NhaA
Lena Kozachkov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
XDS
Wolfgang Kabsch
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2010)
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Paul D. Adams et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
Jeffery B. Klauda et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2010)
Conformations of NhaA the Na+/H+ Exchanger from Escherichia coli, in the pH-Activated and Ion-Translocating States (vol 386, pg 351, 2009)
Matthias Appel et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Functional asymmetry of the F0 motor in bacterial ATP synthases
Alexander Wiedenmann et al.
MOLECULAR MICROBIOLOGY (2009)
Transport mechanism of a bacterial homologue of glutamate transporters
Nicolas Reyes et al.
NATURE (2009)
P-LINCS: A parallel linear constraint solver for molecular simulation
Berk Hess
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
Tuning Escherichia coli for membrane protein overexpression
Samuel Wagner et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Coarse-grained MD simulations of membrane protein-bilayer self-assembly
Kathryn A. Scott et al.
STRUCTURE (2008)
Mechanism of Na+/H+ antiporting
Isaiah T. Arkin et al.
SCIENCE (2007)
Functional characterization of a NapA Na+/H+ antiporter from Thermus thermophilus
Esther M. Furrer et al.
FEBS LETTERS (2007)
Canonical sampling through velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
OPM: Orientations of proteins in membranes database
MA Lomize et al.
BIOINFORMATICS (2006)
pH-induced structural change in a sodium/proton antiporter from Methanococcus jannaschii
KR Vinothkumar et al.
EMBO JOURNAL (2005)
ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures
M Landau et al.
NUCLEIC ACIDS RESEARCH (2005)
Structure of a Na+/H+ antiporter and insights into mechanism of action and regulation by pH
C Hunte et al.
NATURE (2005)
Evolutionary origins of eukaryotic sodium/proton exchangers
CL Brett et al.
AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY (2005)
Ultrafast purification and reconstitution of His-tagged cysteine-less Escherichia coli F1F0 ATP synthase
RR Ishmukhametov et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2005)
Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
AD Mackerell et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
NhaA of Escherichia coli, as a model of a pH-regulated Na+/H+ antiporter
E Padan et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2004)
Coot:: model-building tools for molecular graphics
P Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
MolProbity: structure validation and all-atom contact analysis for nucleic acids and their complexes
IW Davis et al.
NUCLEIC ACIDS RESEARCH (2004)
Structure of a glutamate transporter homologue from Pyrococcus horikoshii
D Yernool et al.
NATURE (2004)