4.8 Article

Comprehensive identification of internal structure and alternative splicing events in circular RNAs

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Specific identification and quantification of circular RNAs from sequencing data

Jun Cheng et al.

BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

The RNA Binding Protein Quaking Regulates Formation of circRNAs

Simon J. Conn et al.

Article Biochemistry & Molecular Biology

Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed

Agnieszka Rybak-Wolf et al.

MOLECULAR CELL (2015)

Article Biochemistry & Molecular Biology

Exon-intron circular RNAs regulate transcription in the nucleus

Zhaoyong Li et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Exon-intron circular RNAs regulate transcription in the nucleus

Zhaoyong Li et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Article Biotechnology & Applied Microbiology

CIRI: an efficient and unbiased algorithm for de novo circular RNA identification

Yuan Gao et al.

GENOME BIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development

Morten T. Veno et al.

GENOME BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Complementary Sequence-Mediated Exon Circularization

Xiao-Ou Zhang et al.

Article Cell Biology

Short intronic repeat sequences facilitate circular RNA production

Dongming Liang et al.

GENES & DEVELOPMENT (2014)

Article Biochemistry & Molecular Biology

Widespread intron retention in mammals functionally tunes transcriptomes

Ulrich Braunschweig et al.

GENOME RESEARCH (2014)

Article Biochemistry & Molecular Biology

circRNA Biogenesis Competes with Pre-mRNA Splicing

Reut Ashwal-Fluss et al.

MOLECULAR CELL (2014)

Review Biotechnology & Applied Microbiology

Detecting and characterizing circular RNAs

William R. Jeck et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemistry & Molecular Biology

RBPmap: a web server for mapping binding sites of RNA-binding proteins

Inbal Paz et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

circBase: a database for circular RNAs

Petar Glazar et al.

Article Biotechnology & Applied Microbiology

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

Steve Hoffmann et al.

GENOME BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Expanded identification and characterization of mammalian circular RNAs

Junjie U. Guo et al.

GENOME BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Circular Intronic Long Noncoding RNAs

Yang Zhang et al.

MOLECULAR CELL (2013)

Article Multidisciplinary Sciences

Natural RNA circles function as efficient microRNA sponges

Thomas B. Hansen et al.

NATURE (2013)

Article Multidisciplinary Sciences

Circular RNAs are a large class of animal RNAs with regulatory potency

Sebastian Memczak et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Circular RNAs are abundant, conserved, and associated with ALU repeats

William R. Jeck et al.

Article Genetics & Heredity

Cell-Type Specific Features of Circular RNA Expression

Julia Salzman et al.

PLOS GENETICS (2013)

Article Biotechnology & Applied Microbiology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim et al.

GENOME BIOLOGY (2013)

Article Biochemical Research Methods

imDEV: a graphical user interface to R multivariate analysis tools in Microsoft Excel

Dmitry Grapov et al.

BIOINFORMATICS (2012)

Article Biotechnology & Applied Microbiology

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu et al.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)

Article Biochemical Research Methods

Identification of novel transcripts in annotated genomes using RNA-Seq

Adam Roberts et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoc et al.

BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Nuclear Retention of Unspliced Pre-mRNAs by Mutant DHX16/hPRP2, a Spliceosomal DEAH-box Protein

Marieta Gencheva et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Article Biochemical Research Methods

Analysis and design of RNA sequencing experiments for identifying isoform regulation

Yarden Katz et al.

NATURE METHODS (2010)

Article Biochemistry & Molecular Biology

SFmap: a web server for motif analysis and prediction of splicing factor binding sites

Inbal Paz et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data

Dorothea Emig et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang et al.

NATURE (2008)

Review Cell Biology

Nonsense-mediated mRNA decay: terminating erroneous gene expression

KE Baker et al.

CURRENT OPINION IN CELL BIOLOGY (2004)

Review Neurosciences

Alternative RNA splicing in the nervous system

PJ Grabowski et al.

PROGRESS IN NEUROBIOLOGY (2001)