4.5 Article

DNA methylome analysis of acute lymphoblastic leukemia cells reveals stochastic de novo DNA methylation in CpG islands

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje et al.

NATURE (2015)

Article Biochemistry & Molecular Biology

limma powers differential expression analyses for RNA-sequencing and microarray studies

Matthew E. Ritchie et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Epigenomic evolution in diffuse large B-cell lymphomas

Heng Pan et al.

NATURE COMMUNICATIONS (2015)

Article Multidisciplinary Sciences

Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing

Volker Hovestadt et al.

NATURE (2014)

Article Biochemistry & Molecular Biology

Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments

Pouya Kheradpour et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Medicine, Research & Experimental

Integrated genetic and epigenetic analysis of childhood acute lymphoblastic leukemia

Maria E. Figueroa et al.

JOURNAL OF CLINICAL INVESTIGATION (2013)

Article Medicine, General & Internal

Acute lymphoblastic leukaemia

Hiroto Inaba et al.

LANCET (2013)

Article Multidisciplinary Sciences

Charting a dynamic DNA methylation landscape of the human genome

Michael J. Ziller et al.

NATURE (2013)

Review Genetics & Heredity

DNA methylation: roles in mammalian development

Zachary D. Smith et al.

NATURE REVIEWS GENETICS (2013)

Article Biochemistry & Molecular Biology

Identification of active regulatory regions from DNA methylation data

Lukas Burger et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

Yang Liao et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biotechnology & Applied Microbiology

Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia

Jessica Nordlund et al.

GENOME BIOLOGY (2013)

Article Biotechnology & Applied Microbiology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim et al.

GENOME BIOLOGY (2013)

Letter Biochemical Research Methods

ChromHMM: automating chromatin-state discovery and characterization

Jason Ernst et al.

NATURE METHODS (2012)

Article Biotechnology & Applied Microbiology

Tissue of origin determines cancer-associated CpG island promoter hypermethylation patterns

Duncan Sproul et al.

GENOME BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Kasper D. Hansen et al.

GENOME BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data

Yaping Liu et al.

GENOME BIOLOGY (2012)

Article Multidisciplinary Sciences

DNA-binding factors shape the mouse methylome at distal regulatory regions

Michael B. Stadler et al.

NATURE (2011)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

GREAT improves functional interpretation of cis-regulatory regions

Cory Y. McLean et al.

NATURE BIOTECHNOLOGY (2010)

Article Medicine, General & Internal

DNMT3A Mutations in Acute Myeloid Leukemia.

Timothy J. Ley et al.

NEW ENGLAND JOURNAL OF MEDICINE (2010)

Article Cell Biology

Roles of the NF-κB Pathway in Lymphocyte Development and Function

Steve Gerondakis et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2010)

Article Multidisciplinary Sciences

Human DNA methylomes at base resolution show widespread epigenomic differences

Ryan Lister et al.

NATURE (2009)

Article Multidisciplinary Sciences

Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia

Charles G. Mullighan et al.

NATURE (2007)

Article Oncology

Opinion - CpG island methylator phenotype in cancer

JP Issa

NATURE REVIEWS CANCER (2004)