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Matthew Kearse et al.
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Charlie G. Buffie et al.
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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
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Easyfig: a genome comparison visualizer
Mitchell J. Sullivan et al.
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Nabil-Fareed Alikhan et al.
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Kevin Liu et al.
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Emma Meader et al.
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Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
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Marianne Horgan et al.
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Ruiqiang Li et al.
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FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
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Stephane Guindon et al.
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Rob Lavigne et al.
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SOAP: short oligonucleotide alignment program
Ruiqiang Li et al.
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Melinda J. Mayer et al.
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Louis-Charles Fortier et al.
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CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
Ibtissem Grissa et al.
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Arthur L. Delcher et al.
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Shan Goh et al.
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PILER-CR: Fast and accurate identification of CRISPR repeats
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Weizhong Li et al.
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R Govind et al.
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Application of phylogenetic networks in evolutionary studies
DH Huson et al.
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An epidemic, toxin gene-variant strain of Clostridium difficile
LC McDonald et al.
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GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
J Besemer et al.
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The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
P Schattner et al.
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SR Casjens et al.
JOURNAL OF BACTERIOLOGY (2005)
Isolation and characterization of temperate bacteriophages of Clostridium difficile
S Goh et al.
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CD-Search: protein domain annotations on the fly
A Marchler-Bauer et al.
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