相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Design and synthesis of a minimal bacterial genome
Clyde A. Hutchison et al.
SCIENCE (2016)
Modeling Microbial Growth Curves with GCAT
Yury V. Bukhman et al.
BIOENERGY RESEARCH (2015)
Yeast Proteome Dynamics from Single Cell Imaging and Automated Analysis
Yolanda T. Chong et al.
CELL (2015)
Plant-derived antifungal agent poacic acid targets β-1,3-glucan
Jeff S. Piotrowski et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Gene essentiality and synthetic lethality in haploid human cells
Vincent A. Blomen et al.
SCIENCE (2015)
Identification and characterization of essential genes in the human genome
Tim Wang et al.
SCIENCE (2015)
Genetic interactions contribute less than additive effects to quantitative trait variation in yeast
Joshua S. Bloom et al.
NATURE COMMUNICATIONS (2015)
An Updated Collection of Sequence Barcoded Temperature-Sensitive Alleles of Yeast Essential Genes
Megan Kofoed et al.
G3-GENES GENOMES GENETICS (2015)
CYCLoPs: A Comprehensive Database Constructed from Automated Analysis of Protein Abundance and Subcellular Localization Patterns in Saccharomyces cerevisiae
Judice L. Y. Koh et al.
G3-GENES GENOMES GENETICS (2015)
Compromising the 19S proteasome complex protects cells from reduced flux through the proteasome
Peter Tsvetkov et al.
ELIFE (2015)
A Map of Directional Genetic Interactions in a Metazoan Cell
Bernd Fischer et al.
ELIFE (2015)
Host genetic variation impacts microbiome composition across human body sites
Ran Blekhman et al.
GENOME BIOLOGY (2015)
Unbiased Screening of Marine Sponge Extracts for Antiinflammatory Agents Combined with Chemical Genomics Identifies Girolline as an Inhibitor of Protein Synthesis
Shan-Yu Fung et al.
ACS CHEMICAL BIOLOGY (2014)
Therapeutics Based on Stop Codon Readthrough
Kim M. Keeling et al.
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 15 (2014)
A Quantitative Chaperone Interaction Network Reveals the Architecture of Cellular Protein Homeostasis Pathways
Mikko Taipale et al.
CELL (2014)
SAINTexpress: Improvements and additional features in Significance Analysis of INTeractome software
Guoci Teo et al.
JOURNAL OF PROTEOMICS (2014)
High-resolution chemical dissection of a model eukaryote reveals targets, pathways and gene functions
Dominic Hoepfner et al.
MICROBIOLOGICAL RESEARCH (2014)
Data, information, knowledge and principle: back to metabolism in KEGG
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2014)
A Conserved Endoplasmic Reticulum Membrane Protein Complex (EMC) Facilitates Phospholipid Transfer from the ER to Mitochondria
Sujoy Lahiri et al.
PLOS BIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
A Comparative Genomic Approach for Identifying Synthetic Lethal Interactions in Human Cancer
Raamesh Deshpande et al.
CANCER RESEARCH (2013)
Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast
Daniel A. Skelly et al.
GENOME RESEARCH (2013)
A global S. cerevisiae small ubiquitin-related modifier (SUMO) system interactome
Tharan Srikumar et al.
MOLECULAR SYSTEMS BIOLOGY (2013)
Systems-level antimicrobial drug and drug synergy discovery
Terry Roemer et al.
NATURE CHEMICAL BIOLOGY (2013)
A suppressor screen in Mecp2 mutant mice implicates cholesterol metabolism in Rett syndrome
Christie M. Buchovecky et al.
NATURE GENETICS (2013)
The CRAPome: a contaminant repository for affinity purification-mass spectrometry data
Dattatreya Mellacheruvu et al.
NATURE METHODS (2013)
An efficient method for genome-wide polyadenylation site mapping and RNA quantification
Stefan Wilkening et al.
NUCLEIC ACIDS RESEARCH (2013)
Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system
Leo C. K. Wan et al.
NUCLEIC ACIDS RESEARCH (2013)
Comparison of Profile Similarity Measures for Genetic Interaction Networks
Raamesh Deshpande et al.
PLOS ONE (2013)
Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes
Patrick A. Gibney et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Comet: An open-source MS/MS sequence database search tool
Jimmy K. Eng et al.
PROTEOMICS (2013)
An Evolutionarily Conserved Synthetic Lethal Interaction Network Identifies FEN1 as a Broad-Spectrum Target for Anticancer Therapeutic Development
Derek M. van Pel et al.
PLOS GENETICS (2013)
Construction of a microbial natural product library for chemical biology studies
Naoki Kato et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2012)
The Ubiquitin-Proteasome System of Saccharomyces cerevisiae
Daniel Finley et al.
GENETICS (2012)
Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae
Mohan Babu et al.
NATURE (2012)
The mystery of missing heritability: Genetic interactions create phantom heritability
Or Zuk et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
The Yeast Ubr1 Ubiquitin Ligase Participates in a Prominent Pathway That Targets Cytosolic Thermosensitive Mutants for Degradation
Farzin Khosrow-Khavar et al.
G3-GENES GENOMES GENETICS (2012)
Conserved rules govern genetic interaction degree across species
Elizabeth N. Koch et al.
GENOME BIOLOGY (2012)
Reconstitution of CF IA from Overexpressed Subunits Reveals Stoichiometry and Provides Insights into Molecular Topology
James M. B. Gordon et al.
BIOCHEMISTRY (2011)
Putting genetic interactions in context through a global modular decomposition
Jeremy Bellay et al.
GENOME RESEARCH (2011)
iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates
David Shteynberg et al.
MOLECULAR & CELLULAR PROTEOMICS (2011)
Systematic exploration of essential yeast gene function with temperature-sensitive mutants
Zhijian Li et al.
NATURE BIOTECHNOLOGY (2011)
Predicting phenotypic variation in yeast from individual genome sequences
Rob Jelier et al.
NATURE GENETICS (2011)
The BioGRID Interaction Database: 2011 update
Chris Stark et al.
NUCLEIC ACIDS RESEARCH (2011)
Pre-mRNA 3′-end processing complex assembly and function
Serena Chan et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2011)
Structure and function of the GINS complex, a key component of the eukaryotic replisome
Stuart A. MacNeill
BIOCHEMICAL JOURNAL (2010)
Fast and SNP-tolerant detection of complex variants and splicing in short reads
Thomas D. Wu et al.
BIOINFORMATICS (2010)
A Consensus of Core Protein Complex Compositions for Saccharomyces cerevisiae
Joris J. Benschop et al.
MOLECULAR CELL (2010)
Genetic interactions reveal the evolutionary trajectories of duplicate genes
Benjamin VanderSluis et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale
Anastasia Baryshnikova et al.
NATURE METHODS (2010)
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
Gabriel Ostlund et al.
NUCLEIC ACIDS RESEARCH (2010)
Genotype to Phenotype: A Complex Problem
Robin D. Dowell et al.
SCIENCE (2010)
Rewiring of Genetic Networks in Response to DNA Damage
Sourav Bandyopadhyay et al.
SCIENCE (2010)
The Genetic Landscape of a Cell
Michael Costanzo et al.
SCIENCE (2010)
Bidirectional promoters generate pervasive transcription in yeast
Zhenyu Xu et al.
NATURE (2009)
Population genomics of domestic and wild yeasts
Gianni Liti et al.
NATURE (2009)
Specific synthetic lethal killing of RAD54B-deficient human colorectal cancer cells by FEN1 silencing
Kirk J. McManus et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
ProteoWizard: open source software for rapid proteomics tools development
Darren Kessner et al.
BIOINFORMATICS (2008)
A Genomewide Suppressor and Enhancer Analysis of cdc13-1 Reveals Varied Cellular Processes Influencing Telomere Capping in Saccharomyces cerevisiae
S. G. Addinall et al.
GENETICS (2008)
Global screening of genes essential for growth in high-pressure and cold environments: Searching for basic adaptive strategies using a yeast deletion library
Fumiyoshi Abe et al.
GENETICS (2008)
Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae
Shay Ben-Aroya et al.
MOLECULAR CELL (2008)
Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes
Scott J. Dixon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
High-quality binary protein interaction map of the yeast interactome network
Haiyuan Yu et al.
SCIENCE (2008)
The chemical genomic portrait of yeast: Uncovering a phenotype for all genes
Maureen E. Hillenmeyer et al.
SCIENCE (2008)
Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast
Assen Roguev et al.
SCIENCE (2008)
An in vivo map of the yeast protein interactome
Kirill Tarassov et al.
SCIENCE (2008)
Genetic Mapping in Human Disease
David Altshuler et al.
SCIENCE (2008)
Network Hubs Buffer Environmental Variation in Saccharomyces cerevisiae
Sasha F. Levy et al.
PLOS BIOLOGY (2008)
Functional maps of protein complexes from quantitative genetic interaction data
Sourav Bandyopadhyay et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
A genome wide analysis of the response to uncapped telomeres in budding yeast reveals a novel role for the NAD(+) biosynthetic gene BNA2 in chromosome end protection
Amanda Greenall et al.
GENOME BIOLOGY (2008)
Natural history and evolutionary principles of gene duplication in fungi
Ilan Wapinski et al.
NATURE (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
A scalable method for integration and functional analysis of multiple microarray datasets
Curtis Huttenhower et al.
BIOINFORMATICS (2006)
Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways
Ben Lehner et al.
NATURE GENETICS (2006)
Finding function: evaluation methods for functional genomic data
Chad L. Myers et al.
BMC GENOMICS (2006)
Single-cell proteomic analysis of S-cerevisiae reveals the architecture of biological noise
John R. S. Newman et al.
NATURE (2006)
Proteome survey reveals modularity of the yeast cell machinery
AC Gavin et al.
NATURE (2006)
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
NJ Krogan et al.
NATURE (2006)
The anaphase promoting complex/cyclosome: a machine designed to destroy
Jan-Michael Peters
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)
Biochemical and genetic analysis of the yeast proteome with a movable ORF collection
DM Gelperin et al.
GENES & DEVELOPMENT (2005)
Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile
M Schuldiner et al.
CELL (2005)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species
KP Byrne et al.
GENOME RESEARCH (2005)
Genetic interactions between polymorphisms that affect gene expression in yeast
RB Brem et al.
NATURE (2005)
Specific killing of BRCA2-deficient tumours with inhibitors of poly(ADP-ribose) polymerase
HE Bryant et al.
NATURE (2005)
Navigating the chaperone network: An integrative map of physical and genetic interactions mediated by the Hsp90 chaperone
RM Zhao et al.
CELL (2005)
Tumor-selective action of HDAC inhibitors involves TRAIL induction in acute myeloid leukemia cells
A Nebbioso et al.
NATURE MEDICINE (2005)
Under cover: causes, effects and implications of Hsp90-mediated genetic capacitance
TA Sangster et al.
BIOESSAYS (2004)
The DISOPRED server for the prediction of protein disorder
JJ Ward et al.
BIOINFORMATICS (2004)
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
BMC BIOINFORMATICS (2004)
Exploration of essential gene functions via titratable promoter alleles
S Mnaimneh et al.
CELL (2004)
TANDEM: matching proteins with tandem mass spectra
R Craig et al.
BIOINFORMATICS (2004)
Global analysis of protein localization in budding yeast
WK Huh et al.
NATURE (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Functional profiling of the Saccharomyces cerevisiae genome
G Giaever et al.
NATURE (2002)
The origin recognition complex: from simple origins to complex functions
SP Bell
GENES & DEVELOPMENT (2002)
Extent of gene duplication in the genomes of Drosophila, nematode, and yeast
ZL Gu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Cell biology - Principles for the buffering of genetic variation
JL Hartman et al.
SCIENCE (2001)
Genomic expression programs in the response of yeast cells to environmental changes
AP Gasch et al.
MOLECULAR BIOLOGY OF THE CELL (2000)