4.8 Article

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Population-level analysis of gut microbiome variation

Gwen Falony et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children

Katri Korpela et al.

NATURE COMMUNICATIONS (2016)

Article Cardiac & Cardiovascular Systems

The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids

Jingyuan Fu et al.

CIRCULATION RESEARCH (2015)

Review Nutrition & Dietetics

Interaction of dietary compounds, especially polyphenols, with the intestinal microbiota: a review

Aleksandra Duda-Chodak et al.

EUROPEAN JOURNAL OF NUTRITION (2015)

Article Multidisciplinary Sciences

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

Kristoffer Forslund et al.

NATURE (2015)

Letter Biochemical Research Methods

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Duy Tin Truong et al.

NATURE METHODS (2015)

Article Public, Environmental & Occupational Health

Cohort Profile: LifeLines, a three-generation cohort study and biobank

Salome Scholtens et al.

INTERNATIONAL JOURNAL OF EPIDEMIOLOGY (2015)

Article Biochemistry & Molecular Biology

Gene Ontology Consortium: going forward

J. A. Blake et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

UniProt: a hub for protein information

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biotechnology & Applied Microbiology

The microbiome quality control project: baseline study design and future directions

Rashmi Sinha et al.

GENOME BIOLOGY (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

Human Genetics Shape the Gut Microbiome

Julia K. Goodrich et al.

Article Biotechnology & Applied Microbiology

A Transgenic Probiotic Secreting a Parasite Immunomodulator for Site-Directed Treatment of Gut Inflammation

Rose A. Whelan et al.

MOLECULAR THERAPY (2014)

Article Biochemical Research Methods

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

Paul J. McMurdie et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Metformin Retards Aging in C. elegans by Altering Microbial Folate and Methionine Metabolism

Filipe Cabreiro et al.

Article Multidisciplinary Sciences

Richness of human gut microbiome correlates with metabolic markers

Emmanuelle Le Chatelier et al.

NATURE (2013)

Article Nutrition & Dietetics

Influence of red wine polyphenols and ethanol on the gut microbiota ecology and biochemical biomarkers

Maria Isabel Queipo-Ortuno et al.

AMERICAN JOURNAL OF CLINICAL NUTRITION (2012)

Article Gastroenterology & Hepatology

Altered Levels of Fecal Chromogranins and Secretogranins in IBS: Relevance for Pathophysiology and Symptoms?

Lena Ohman et al.

AMERICAN JOURNAL OF GASTROENTEROLOGY (2012)

Review Biochemistry & Molecular Biology

The Impact of the Gut Microbiota on Human Health: An Integrative View

Jose C. Clemente et al.

Review Biochemistry & Molecular Biology

Chromogranin A-Derived Peptides Are Involved in Innate Immunity

R. Aslam et al.

CURRENT MEDICINAL CHEMISTRY (2012)

Article Multidisciplinary Sciences

Structure, function and diversity of the healthy human microbiome

Curtis Huttenhower et al.

NATURE (2012)

Article Biochemical Research Methods

Metagenomic microbial community profiling using unique clade-specific marker genes

Nicola Segata et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

The UniProt-GO Annotation database in 2011

Emily C. Dimmer et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage

Bernd W. Brandt et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Endocrinology & Metabolism

The Extended Granin Family: Structure, Function, and Biomedical Implications

Alessandro Bartolomucci et al.

ENDOCRINE REVIEWS (2011)

Article Multidisciplinary Sciences

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

Gary D. Wu et al.

SCIENCE (2011)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Gastroenterology & Hepatology

Chromogranin A as a possible tool in the diagnosis of irritable bowel syndrome

Magdy El-Salhy et al.

SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY (2010)

Article Medical Laboratory Technology

Age-related faecal calprotectin, lactoferrin and tumour M2-PK concentrations in healthy volunteers

Shilpa Joshi et al.

ANNALS OF CLINICAL BIOCHEMISTRY (2010)

Article Gastroenterology & Hepatology

Elevated Human β-Defensin-2 Levels Indicate an Activation of the Innate Immune System in Patients With Irritable Bowel Syndrome

Jost Langhorst et al.

AMERICAN JOURNAL OF GASTROENTEROLOGY (2009)

Article Gastroenterology & Hepatology

Plasma Chromogranin A in Patients with Inflammatory Bowel Disease

Valentina Sciolo et al.

INFLAMMATORY BOWEL DISEASES (2009)

Article Nutrition & Dietetics

Citrulline as a biomarker of intestinal failure due to enterocyte mass reduction

Pascal Crenn et al.

CLINICAL NUTRITION (2008)

Article Multidisciplinary Sciences

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

Harry Sokol et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biotechnology & Applied Microbiology

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

T. Z. DeSantis et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)