相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Evidence for widespread subfunctionalization of splice forms in vertebrate genomes
Matthew J. Lambert et al.
GENOME RESEARCH (2015)
Neighboring Genes Show Correlated Evolution in Gene Expression
Avazeh T. Ghanbarian et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Maintenance and Loss of Duplicated Genes by Dosage Subfunctionalization
Jean-Francois Gout et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
An integrated map of structural variation in 2,504 human genomes
Peter H. Sudmant et al.
NATURE (2015)
Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse
Tomas Babak et al.
NATURE GENETICS (2015)
WASP: allele-specific software for robust molecular quantitative trait locus discovery
Bryce van de Geijn et al.
NATURE METHODS (2015)
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
Kristin G. Ardlie et al.
SCIENCE (2015)
Why the activity of a gene depends on its neighbors
Alexander Feuerborn et al.
TRENDS IN GENETICS (2015)
Gene Age Predicts the Strength of Purifying Selection Acting on Gene Expression Variation in Humans
Konstantin Y. Popadin et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time
Gavin C. Conant et al.
CURRENT OPINION IN PLANT BIOLOGY (2014)
Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
Alexis Battle et al.
GENOME RESEARCH (2014)
Activities at the Universal Protein Resource (UniProt)
Rolf Apweiler et al.
NUCLEIC ACIDS RESEARCH (2014)
Ensembl 2014
Paul Flicek et al.
NUCLEIC ACIDS RESEARCH (2014)
Transcriptome and genome sequencing uncovers functional variation in humans
Tuuli Lappalainen et al.
NATURE (2013)
The Genotype-Tissue Expression (GTEx) project
John Lonsdale et al.
NATURE GENETICS (2013)
The disease and gene annotations (DGA): an annotation resource for human disease
Kai Peng et al.
NUCLEIC ACIDS RESEARCH (2013)
Following Gene Duplication, Paralog Interference Constrains Transcriptional Circuit Evolution
Christopher R. Baker et al.
SCIENCE (2013)
Alternative Splicing and Subfunctionalization Generates Functional Diversity in Fungal Proteomes
Alexandra N. Marshall et al.
PLOS GENETICS (2013)
Large Scale of Human Duplicate Genes Divergence
Alexander E. Vinogradov
JOURNAL OF MOLECULAR EVOLUTION (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
ChromHMM: automating chromatin-state discovery and characterization
Jason Ernst et al.
NATURE METHODS (2012)
Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues
Jason Merkin et al.
SCIENCE (2012)
The Evolutionary Landscape of Alternative Splicing in Vertebrate Species
Nuno L. Barbosa-Morais et al.
SCIENCE (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist et al.
SYSTEMATIC BIOLOGY (2012)
The evolution of gene expression levels in mammalian organs
David Brawand et al.
NATURE (2011)
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
Vincent Ranwez et al.
PLOS ONE (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Origins, evolution, and phenotypic impact of new genes
Henrik Kaessmann
GENOME RESEARCH (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
The NIH Roadmap Epigenomics Mapping Consortium
Bradley E. Bernstein et al.
NATURE BIOTECHNOLOGY (2010)
The evolution of gene duplications: classifying and distinguishing between models
Hideki Innan et al.
NATURE REVIEWS GENETICS (2010)
Maintenance of duplicate genes and their functional redundancy by reduced expression
Wenfeng Qian et al.
TRENDS IN GENETICS (2010)
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
Jacob F. Degner et al.
BIOINFORMATICS (2009)
Distinguishing Among Evolutionary Models for the Maintenance of Gene Duplicates
Matthew W. Hahn
JOURNAL OF HEREDITY (2009)
RNA-based gene duplication: mechanistic and evolutionary insights
Henrik Kaessmann et al.
NATURE REVIEWS GENETICS (2009)
The complex relationship of gene duplication and essentiality
Takashi Makino et al.
TRENDS IN GENETICS (2009)
Turning a hobby into a job: How duplicated genes find new functions
Gavin C. Conant et al.
NATURE REVIEWS GENETICS (2008)
A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders
Jennifer A. Lee et al.
CELL (2007)
Divergence in expression between duplicated genes in Arabidopsis
Eric W. Ganko et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Natural history and evolutionary principles of gene duplication in fungi
Ilan Wapinski et al.
NATURE (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Evolution after gene duplication: Models, mechanisms, sequences, systems, and organisms
Christian Roth et al.
JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION (2007)
Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation
John E. Karro et al.
NUCLEIC ACIDS RESEARCH (2007)
The UCSC Genome Browser Database: Update 2007
R. M. Kuhn et al.
NUCLEIC ACIDS RESEARCH (2007)
Gene duplication of the zebrafish kit ligand and partitioning of melanocyte development functions to kit ligand a
Keith A. Hultman et al.
PLOS GENETICS (2007)
How prevalent is functional alternative splicing in the human genome?
R Sorek et al.
TRENDS IN GENETICS (2004)
MrBayes 3: Bayesian phylogenetic inference under mixed models
F Ronquist et al.
BIOINFORMATICS (2003)
Evolution by gene duplication: an update
JZ Zhang
TRENDS IN ECOLOGY & EVOLUTION (2003)
Low conservation of alternative splicing patterns in the human and mouse genomes
RN Nurtdinov et al.
HUMAN MOLECULAR GENETICS (2003)
Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
B Modrek et al.
NATURE GENETICS (2003)
Duplication, degeneration and subfunctionalization of the nested synapsin-Timp genes in Fugu
WP Yu et al.
TRENDS IN GENETICS (2003)
Recent segmental duplications in the human genome
JA Bailey et al.
SCIENCE (2002)
Recent duplication, domain accretion and the dynamic mutation of the human genome
EE Eichler
TRENDS IN GENETICS (2001)
MRBAYES: Bayesian inference of phylogenetic trees
JP Huelsenbeck et al.
BIOINFORMATICS (2001)
Human LINE retrotransposons generate processed pseudogenes
C Esnault et al.
NATURE GENETICS (2000)
分享论文
