相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories
Robert T. McGibbon et al.
BIOPHYSICAL JOURNAL (2015)
Variational cross-validation of slow dynamical modes in molecular kinetics
Robert T. McGibbon et al.
JOURNAL OF CHEMICAL PHYSICS (2015)
Conserve Water: A Method for the Analysis of Solvent in Molecular Dynamics
Matthew P. Harrigan et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2015)
Identification of a Second Substrate-binding Site in Solute-Sodium Symporters
Zheng Li et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
Structural Determinants of Water Permeation through the Sodium-Galactose Transporter vSGLT
Joshua L. Adelman et al.
BIOPHYSICAL JOURNAL (2014)
Metadynamics Simulations Reveal a Na+ Independent Exiting Path of Galactose for the Inward-Facing Conformation of vSGLT
Ina Bisha et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Identification of slow molecular order parameters for Markov model construction
Guillermo Perez-Hernandez et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
A Candidate Ion-Retaining State in the Inward-Facing Conformation of Sodium/Galactose Symporter: Clues from Atomistic Simulations
Ina Bisha et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
Improvements in Markov State Model Construction Reveal Many Non-Native Interactions in the Folding of NTL9
Christian R. Schwantes et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
Transient formation of water-conducting states in membrane transporters
Jing Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Functional identification and characterization of sodium binding sites in Na symporters
Donald D. F. Loo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Bridging the gap between structure and kinetics of human SGLT1
Monica Sala-Rabanal et al.
AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY (2012)
Structural selectivity of human SGLT inhibitors
Charles S. Hummel et al.
AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY (2012)
A gate-free pathway for substrate release from the inward-facing state of the Na+-galactose transporter
Jing Li et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2012)
Glucose transport by human renal Na+/D-glucose cotransporters SGLT1 and SGLT2
Charles S. Hummel et al.
AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY (2011)
The Structural Pathway for Water Permeation through Sodium-Glucose Cotransporters
Louis J. Sasseville et al.
BIOPHYSICAL JOURNAL (2011)
Conserved Tyrosine in the First Transmembrane Segment of Solute:Sodium Symporters Is Involved in Na+-coupled Substrate Co-transport
Sonia Mazier et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2011)
MSMBuilder2: Modeling Conformational Dynamics on the Picosecond to Millisecond Scale
Kyle A. Beauchamp et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)
Biology of Human Sodium Glucose Transporters
Ernest M. Wright et al.
PHYSIOLOGICAL REVIEWS (2011)
Water Permeation through the Sodium-Dependent Galactose Cotransporter vSGLT
Seungho Choe et al.
BIOPHYSICAL JOURNAL (2010)
Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
Jeffery B. Klauda et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2010)
The sodium/galactose symporter crystal structure is a dynamic, not so occluded state
Elia Zomot et al.
MOLECULAR BIOSYSTEMS (2010)
The mechanism of sodium and substrate release from the binding pocket of vSGLT
Akira Watanabe et al.
NATURE (2010)
Ion-Releasing State of a Secondary Membrane Transporter
Jing Li et al.
BIOPHYSICAL JOURNAL (2009)
Additive Empirical Force Field for Hexopyranose Monosaccharides
Olgun Guvench et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2008)
The crystal structure of a sodium galactose transporter reveals mechanistic insights into Na+/sugar symport
Salem Faham et al.
SCIENCE (2008)
Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations
Sunhwan Jo et al.
PLOS ONE (2007)
Conformational dynamics of hSGLT1 during Na+/glucose cotransport
Donald D. F. Loo et al.
JOURNAL OF GENERAL PHYSIOLOGY (2006)
OPM: Orientations of proteins in membranes database
MA Lomize et al.
BIOINFORMATICS (2006)
A reinvestigation of the secondary structure of functionally active vSGLT, the Vibrio sodium/galactose cotransporter
E Turk et al.
BIOCHEMISTRY (2006)
Scalable molecular dynamics with NAMD
JC Phillips et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)
Crystal structure of a bacterial homologue of Na+/Cl--dependent neurotransmitter transporters
A Yamashita et al.
NATURE (2005)
Kinetics of the reverse mode of the Na+/glucose cotransporter
S Eskandari et al.
JOURNAL OF MEMBRANE BIOLOGY (2005)
Local conformational changes in the vibrio Na+/galactose cotransporter
M Veenstra et al.
BIOCHEMISTRY (2004)
Glide: A new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy
RA Friesner et al.
JOURNAL OF MEDICINAL CHEMISTRY (2004)
Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
AD Mackerell et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Functional asymmetry of the human Na+/glucose transporter (hSGLT1) in bacterial membrane vesicles
M Quick et al.
BIOCHEMISTRY (2003)
Voltage and substrate dependence of the inverse transport mode of the rabbit Na+/glucose cotransporter (SGLT1)
GA Sauer et al.
FEBS LETTERS (2000)