相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Strain Mediated Adaptation Is Key for Myosin Mechanochemistry: Discovering General Rules for Motor Activity
Biman Jana et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Circovirus Transport Proceeds via Direct Interaction of the Cytoplasmic Dynein IC1 Subunit with the Viral Capsid Protein
Jingjing Cao et al.
JOURNAL OF VIROLOGY (2015)
Structure of human cytoplasmic dynein-2 primed for its power stroke
Helgo Schmidt et al.
NATURE (2015)
A model for the coordinated stepping of cytoplasmic dynein
X. Y. Zhao et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2014)
Structural mechanism of the dynein power stroke
Jianfeng Lin et al.
NATURE CELL BIOLOGY (2014)
From structure to function: the convergence of structure based models and co-evolutionary information
Biman Jana et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2014)
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
Marco Biasini et al.
NUCLEIC ACIDS RESEARCH (2014)
Tension on the linker gates the ATP-dependent release of dynein from microtubules
Frank B. Cleary et al.
NATURE COMMUNICATIONS (2014)
Big steps toward understanding dynein
Masahide Kikkawa
JOURNAL OF CELL BIOLOGY (2013)
Crystal clear insights into how the dynein motor moves
Andrew P. Carter
JOURNAL OF CELL SCIENCE (2013)
On Reaction Coordinate Optimality
Sergei V. Krivov
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
Functions and mechanics of dynein motor proteins
Anthony J. Roberts et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2013)
Characterization of the free-energy landscapes of proteins by NMR-guided metadynamics
Daniele Granata et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Native contacts determine protein folding mechanisms in atomistic simulations
Robert B. Best et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The mechanism of dynein motility: Insight from crystal structures of the motor domain
Carol Cho et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2012)
Coarse-grained modeling of the structural states and transition underlying the powerstroke of dynein motor domain
Wenjun Zheng
JOURNAL OF CHEMICAL PHYSICS (2012)
The Shadow Map: A General Contact Definition for Capturing the Dynamics of Biomolecular Folding and Function
Jeffrey K. Noel et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
Structural biology of cytoplasmic and axonemal dyneins
Takashi Ishikawa
JOURNAL OF STRUCTURAL BIOLOGY (2012)
The 2.8 Å crystal structure of the dynein motor domain
Takahide Kon et al.
NATURE (2012)
Insights into dynein motor domain function from a 3.3-Å crystal structure
Helgo Schmidt et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Dynein achieves processive motion using both stochastic and coordinated stepping
Weihong Qiu et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)
Biomolecular dynamics: order-disorder transitions and energy landscapes
Paul C. Whitford et al.
REPORTS ON PROGRESS IN PHYSICS (2012)
ATP-Driven Remodeling of the Linker Domain in the Dynein Motor
Anthony J. Roberts et al.
STRUCTURE (2012)
The Origin of Minus-end Directionality and Mechanochemistry of Ncd Motors
Biman Jana et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
A Physical Model Reveals the Mechanochemistry Responsible for Dynein's Processive Motion
Denis Tsygankov et al.
BIOPHYSICAL JOURNAL (2011)
Role of Water in the Enzymatic Catalysis: Study of ATP plus AMP → 2ADP Conversion by Adenylate Kinase
Bharat V. Adkar et al.
JOURNAL OF PHYSICAL CHEMISTRY A (2011)
X-ray structure of a functional full-length dynein motor domain
Takahide Kon et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2011)
Crystal Structure of the Dynein Motor Domain
Andrew P. Carter et al.
SCIENCE (2011)
SMOG@ctbp: simplified deployment of structure-based models in GROMACS
Jeffrey K. Noel et al.
NUCLEIC ACIDS RESEARCH (2010)
AAA plus Ring and Linker Swing Mechanism in the Dynein Motor
Anthony J. Roberts et al.
CELL (2009)
Walking the walk: how kinesin and dynein coordinate their steps
Arne Gennerich et al.
CURRENT OPINION IN CELL BIOLOGY (2009)
Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective
Nicolas Guex et al.
ELECTROPHORESIS (2009)
Role of conformational dynamics in kinetics of an enzymatic cycle in a nonequilibrium steady state
Wei Min et al.
JOURNAL OF CHEMICAL PHYSICS (2009)
Kinesin superfamily motor proteins and intracellular transport
Nobutaka Hirokawa et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)
Multiscale approaches for studying energy transduction in dynein
Adrian W. R. Serohijos et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2009)
The SWISS-MODEL Repository and associated resources
Florian Kiefer et al.
NUCLEIC ACIDS RESEARCH (2009)
Ligand-induced global transitions in the catalytic domain of protein kinase A
Changbong Hyeon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Molecular mechanism of force generation by dynein, a molecular motor belonging to the AAA plus family
Naoki Numata et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2008)
Two-dimensional reaction free energy surfaces of catalytic reaction: Effects of protein conformational dynamics on enzyme catalysis
Wei Min et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2008)
Model for the unidirectional motion of a dynein molecule
Sutapa Mukherji
PHYSICAL REVIEW E (2008)
Mutations as trapdoors to two competing native conformations of the Rop-dimer
Alexander Schug et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Mechanical control of the directional stepping dynamics of the kinesin motor
Changbong Hyeon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The coordination of cyclic microtubule association/dissociation and tail swing of cytoplasmic dynein
Kenji Imamula et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Spindly, a novel protein essential for silencing the spindle assembly checkpoint, recruits dynein to the kinetochore
Eric R. Griffis et al.
JOURNAL OF CELL BIOLOGY (2007)
Metadynamics in essential coordinates:: Free energy simulation of conformational changes
Vojtech Spiwok et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2007)
Conformational transitions of adenylate kinase: Switching by cracking
Paul C. Whitford et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Internal strain regulates the nucleotide binding site of the kinesin leading head
Changbong Hyeon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Head-head coordination is required for the processive motion of cytoplasmic dynein, an AAA+ molecular motor
Tomohiro Shima et al.
JOURNAL OF STRUCTURAL BIOLOGY (2006)
Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations
Kei-ichi Okazaki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Single-molecule analysis of dynein processivity and stepping behavior
Samara L. Reck-Peterson et al.
CELL (2006)
Simple theoretical model explains dynein's response to load
YQ Gao
BIOPHYSICAL JOURNAL (2006)
ATP hydrolysis cycle-dependent tail motions in cytoplasmic dynein
T Kon et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2005)
Reaction coordinates and rates from transition paths
RB Best et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Dynein: An ancient motor protein involved in multiple modes of transport
RB Vallee et al.
JOURNAL OF NEUROBIOLOGY (2004)
Theory of protein folding
JN Onuchic et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)
Molecular motors: Strategies to get along
R Mallik et al.
CURRENT BIOLOGY (2004)
A single-headed recombinant fragment of Dictyostelium cytoplasmic dynein can drive the robust sliding of microtubules
M Nishiura et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins
O Miyashita et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
The molecular motor toolbox for intracellular transport
RD Vale
CELL (2003)
Dynein structure and power stroke
SA Burgess et al.
NATURE (2003)
Escaping free-energy minima
A Laio et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Function of dynein and dynactin in herpes simplex virus capsid transport
K Döhner et al.
MOLECULAR BIOLOGY OF THE CELL (2002)
Topological and energetic factors: What determines the structural details of the transition state ensemble and en-route intermediates for protein folding? An investigation for small globular proteins
C Clementi et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)