4.8 Article

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

The Comparative Toxicogenomics Database: update 2017

Allan Peter Davis et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

WormBase 2016: expanding to enable helminth genomic research

Kevin L. Howe et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine

Christine G. Elsik et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

FlyBase: establishing a Gene Group resource for Drosophila melanogaster

Helen Attrill et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

PANTHER version 10: expanded protein families and functions, and analysis tools

Huaiyu Mi et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

ClinVar: public archive of interpretations of clinically relevant variants

Melissa J. Landrum et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Genetics & Heredity

A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease

Damian Smedley et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2016)

Article Genetics & Heredity

Navigating the Phenotype Frontier: The Monarch Initiative

Julie A. McMurry et al.

GENETICS (2016)

Article Multidisciplinary Sciences

Analysis of protein-coding genetic variation in 60,706 humans

Monkol Lek et al.

NATURE (2016)

Article Genetics & Heredity

Navigating the Phenotype Frontier: The Monarch Initiative

Julie A. McMurry et al.

GENETICS (2016)

Article Mathematical & Computational Biology

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

Jerven T. Bolleman et al.

JOURNAL OF BIOMEDICAL SEMANTICS (2016)

Article Mathematical & Computational Biology

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

Alexander D. Diehl et al.

JOURNAL OF BIOMEDICAL SEMANTICS (2016)

Article Multidisciplinary Sciences

The Ontology for Biomedical Investigations

Anita Bandrowski et al.

PLOS ONE (2016)

Article Biotechnology & Applied Microbiology

High-performance web services for querying gene and variant annotation

Jiwen Xin et al.

GENOME BIOLOGY (2016)

Article Genetics & Heredity

The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease

Tudor Groza et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2015)

Article Biochemical Research Methods

KaBOB: ontology-based semantic integration of biomedical databases

Kevin M. Livingston et al.

BMC BIOINFORMATICS (2015)

Review Developmental Biology

Cross-organism analysis using InterMine

Rachel Lyne et al.

GENESIS (2015)

Article Developmental Biology

ZFIN, The zebrafish model organism database: Updates and new directions

Leyla Ruzicka et al.

GENESIS (2015)

Article Genetics & Heredity

Use of Model Organism and Disease Databases to Support Matchmaking for Human Disease Gene Discovery

Christopher J. Mungall et al.

HUMAN MUTATION (2015)

Article Biochemistry & Molecular Biology

Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data

Terry F. Hayamizu et al.

MAMMALIAN GENOME (2015)

Article Biochemistry & Molecular Biology

Mouse Genome Informatics (MGI): reflecting on 25 years

Janan T. Eppig et al.

MAMMALIAN GENOME (2015)

Article Biochemistry & Molecular Biology

Allele, phenotype and disease data at Mouse Genome Informatics: improving access and analysis

Susan M. Bello et al.

MAMMALIAN GENOME (2015)

Article Medicine, General & Internal

ClinGen - The Clinical Genome Resource

Heidi L. Rehm et al.

NEW ENGLAND JOURNAL OF MEDICINE (2015)

Article Mathematical & Computational Biology

Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora

T. Groza et al.

Database-The Journal of Biological Databases and Curation (2015)

Article Biochemistry & Molecular Biology

Gene Ontology Consortium: going forward

J. A. Blake et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

The BioGRID interaction database: 2015 update

Andrew Chatr-aryamontri et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders

Joanna S. Amberger et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

Improved exome prioritization of disease genes through cross-species phenotype comparison

Peter N. Robinson et al.

GENOME RESEARCH (2014)

Article Biochemistry & Molecular Biology

Mouse Phenome Database

Stephen C. Grubb et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

Sebastian Koehler et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

Danielle Welter et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Data, information, knowledge and principle: back to metabolism in KEGG

Minoru Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

InterMine: extensive web services for modern biology

Alex Kalderimis et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Mathematical & Computational Biology

Standardized description of scientific evidence using the Evidence Ontology (ECO)

Marcus C. Chibucos et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2014)

Article Mathematical & Computational Biology

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon

Melissa A. Haendel et al.

JOURNAL OF BIOMEDICAL SEMANTICS (2014)

Article Biochemical Research Methods

Prediction of gene-phenotype associations in humans, mice, and plants using phenologs

John O. Woods et al.

BMC BIOINFORMATICS (2013)

Article Genetics & Heredity

PhenoTips: Patient Phenotyping Software for Clinical and Research Use

Marta Girdea et al.

HUMAN MUTATION (2013)

Article Mathematical & Computational Biology

PhenoDigm: analyzing curated annotations to associate animal models with human diseases

Damian Smedley et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2013)

Article Mathematical & Computational Biology

The mouse-human anatomy ontology mapping project

Terry F. Hayamizu et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2012)

Article Computer Science, Software Engineering

D3: Data-Driven Documents

Michael Bostock et al.

IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS (2011)

Article Computer Science, Interdisciplinary Applications

Evolution of the Sequence Ontology terms and relationships

Christopher J. Mungall et al.

JOURNAL OF BIOMEDICAL INFORMATICS (2011)

Review Genetics & Heredity

Phenomics: the next challenge

David Houle et al.

NATURE REVIEWS GENETICS (2010)

Article Multidisciplinary Sciences

Systematic discovery of nonobvious human disease models through orthologous phenotypes

Kriston L. McGary et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biotechnology & Applied Microbiology

Integrating phenotype ontologies across multiple species

Christopher J. Mungall et al.

GENOME BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation

Nicole L. Washington et al.

PLOS BIOLOGY (2009)

Article Biotechnology & Applied Microbiology

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

Barry Smith et al.

NATURE BIOTECHNOLOGY (2007)

Article Biotechnology & Applied Microbiology

Relations in biomedical ontologies

B Smith et al.

GENOME BIOLOGY (2005)