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A. Maxwell Burroughs et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
PrrC-anticodon nuclease: functional organization of a prototypical bacterial restriction RNase
Shani Blanga-Kanfi et al.
NUCLEIC ACIDS RESEARCH (2006)
The tRNase Z family of proteins:: physiological functions, substrate specificity and structural properties
A Vogel et al.
BIOLOGICAL CHEMISTRY (2005)
The Kluyveromyces lactis γ-toxin targets tRNA anticodons
J Lu et al.
RNA (2005)
Scaffolding microdomains and beyond: the function of reggie/flotillin proteins
MF Langhorst et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2005)
Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabildopsis
JJ Li et al.
CURRENT BIOLOGY (2005)
Crystal structure of A-aeolicus Argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage
YR Yuan et al.
MOLECULAR CELL (2005)
An end-healing enzyme from Clostridium thermocellum with 5′ kinase, 2′,3′ phosphatase, and adenylyltransferase activities
A Martins et al.
RNA (2005)
Phage abortive infection in lactococci: variations on a theme
MC Chopin et al.
CURRENT OPINION IN MICROBIOLOGY (2005)
Structural insights into RNA quality control: The Ro autoantigen binds misfolded RNAs via its central cavity
AJ Stein et al.
CELL (2005)
Crystal structure of the RNA 2′-phosphotransferase from Aeropyrum pemix K1
M Kato-Murayama et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
A novel thermostable membrane protease forming an operon with a stomatin homolog from the hyperthermophilic archaebacterium Pyrococcus horikoshii
H Yokoyama et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2005)
Methylation as a crucial step in plant microRNA biogenesis
B Yu et al.
SCIENCE (2005)
Analysis of 2 '-phosphotransferase (Tpt1 p) from Saccharomyces cerevisiae: Evidence for a conserved two-step reaction mechanism
MA Steiger et al.
RNA (2005)
Structure-function analysis of the yeast NAD(+)-dependent tRNA 2'-phosphotransferase Tpt1
R Sawaya et al.
RNA (2005)
A highly specific phosphatase that acts on ADP-ribose 1 ''-phosphate, a metabolite of tRNA splicing in Saccharomyces cerevisiae
NP Shull et al.
NUCLEIC ACIDS RESEARCH (2005)
Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members
LM Iyer et al.
NUCLEIC ACIDS RESEARCH (2005)
Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins
M Englert et al.
NUCLEIC ACIDS RESEARCH (2005)
Conformational antagonism between opposing active sites in a bifunctional Re1A/SpoT homolog modulates (p)ppGpp metabolism during the stringent response
T Hogg et al.
CELL (2004)
Evolutionary history and higher order classification of AAA plus ATPases
LM Iyer et al.
JOURNAL OF STRUCTURAL BIOLOGY (2004)
Structure of the La motif: a winged helix domain mediates RNA binding via a conserved aromatic patch
G Dong et al.
EMBO JOURNAL (2004)
Structure of a bifunctional DNA primase-polymerase
G Lipps et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
Structure and mechanism of RNA ligase
CK Ho et al.
STRUCTURE (2004)
The SHS2 module is a common structural theme in functionally diverse protein groups, like Rpb7p, FtsA, gyrI, and MTH1598/Tm1083 superfamilies
V Anantharaman et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
Phosphoryl group transfer: evolution of a catalytic scaffold
KN Allen et al.
TRENDS IN BIOCHEMICAL SCIENCES (2004)
RNA substrate specificity and structure-guided mutational analysis of bacteriophage T4 RNA ligase 2
J Nandakumar et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
The polynucleotide ligase and RNA capping enzyme superfamily of covalent nucleotidyltransferases
S Shuman et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)
Predicted role for the archease protein family based on structural and sequence analysis of TM1083 and MTH1598, two proteins structurally characterized through structural genomics efforts
JM Canaves
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
Argonaute protein in the early divergent eukaryote Trypanosoma brucei: Control of small interfering RNA accumulation and retroposon transcript abundance
HF Shi et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging
LM Iyer et al.
NUCLEIC ACIDS RESEARCH (2004)
How an RNA ligase discriminates RNA versus DNA damage
J Nandakumar et al.
MOLECULAR CELL (2004)
Crystal structure of a phosphoinositide phosphatase, MTMR2: Insights into myotubular myopathy and Charcot-Marie-Tooth syndrome
MJ Begley et al.
MOLECULAR CELL (2003)
Evolution and classification of P-loop kinases and related proteins
DD Leipe et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
The TROVE module: A common element in telomerase, Ro and Vault ribonucleoproteins
A Bateman et al.
BMC BIOINFORMATICS (2003)
Identification of myotubularin as the lipid phosphatase catalytic subunit associated with the 3-phosphatase adapter protein, 3-PAP
HH Nandurkar et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Twists and turns: a tale of two shikimate-pathway enzymes
KA Brown et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2003)
Association of stress proteins with autoantigens: a possible mechanism for triggering autoimmunity?
AW Purcell et al.
CLINICAL AND EXPERIMENTAL IMMUNOLOGY (2003)
Kinetoplastid RNA editing ligases: complex association, characterization, and substrate requirements
SS Palazzo et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2003)
Differential action of natural selection on the N and C-terminal domains of 2′-5′ oligoadenylate synthetases and the potential nuclease function of the C-terminal domain
IB Rogozin et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system
V Anantharaman et al.
GENOME BIOLOGY (2003)
The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism
L Aravind et al.
GENOME BIOLOGY (2003)
Letter to the Editor: Solution structure of the hypothetical protein YqgF from Escherichia coli reveals an RNAse H fold
DJ Liu et al.
JOURNAL OF BIOMOLECULAR NMR (2003)
Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily
R Mazumder et al.
NUCLEIC ACIDS RESEARCH (2002)
tRNomics: Analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features
C Marck et al.
RNA (2002)
Structure and mechanism of T4 polynucleotide kinase: an RNA repair enzyme
LK Wang et al.
EMBO JOURNAL (2002)
Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: Implications for protein evolution in the RNA world
L Aravind et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2002)
Loss of phosphatase activity in myotubularin-related protein 2 is associated with Charcot-Marie-Tooth disease type 4B1
P Berger et al.
HUMAN MOLECULAR GENETICS (2002)
The modes of action of colicins E5 and D, and related cytotoxic tRNases
H Masaki et al.
BIOCHIMIE (2002)
Killing of E-coli cells by E group nuclease colicins
R James et al.
BIOCHIMIE (2002)
Genetics of the phage growth limitation (Pgl) system of Streptomyces coelicolor A3(2)
P Sumby et al.
MOLECULAR MICROBIOLOGY (2002)
Comparative genomics and evolution of proteins involved in RNA metabolism
V Anantharaman et al.
NUCLEIC ACIDS RESEARCH (2002)
Classification and evolution of P-loop GTPases and related ATPases
DD Leipe et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
The mitochondrial PHB complex: roles in mitochondrial respiratory complex assembly, ageing and degenerative disease
LGJ Nijtmans et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2002)
Molecular characterization of a new abortive infection system (AbiU) from Lactococcus lactis LL51-1
G Dai et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2001)
Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system
L Aravind et al.
GENOME RESEARCH (2001)
Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics
KS Makarova et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2001)
The inositol polyphosphate 5-phosphatases and the apurinic/apyrimidinic base excision repair endonucleases share a common mechanism for catalysis
JC Whisstock et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)
Translational termination comes of age
LL Kisselev et al.
TRENDS IN BIOCHEMICAL SCIENCES (2000)
Holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories
L Aravind et al.
NUCLEIC ACIDS RESEARCH (2000)
The crystal structure of Bacillus cereus phosphonoacetaldehyde hydrolase:: Insight into catalysis of phosphorus bond cleavage and catalytic diversification within the HAD enzyme superfamily
MC Morais et al.
BIOCHEMISTRY (2000)
The structural basis of ribosome activity in peptide bond synthesis
P Nissen et al.
SCIENCE (2000)
Developmental cheating and the evolutionary biology of Dictyostelium and Myxococcus
DN Dao et al.
MICROBIOLOGY-SGM (2000)
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