☆ 4.5 Article

Complete Mitogenome and Phylogenetic Analysis of a Marine Ray-Finned Fish, Alcichthys elongatus (Perciformes: Cottidae)

FISHES (2023)

相关参考文献

注意：仅列出部分参考文献，下载原文获取全部文献信息。

Article Biochemistry & Molecular Biology

MitoFish, MitoAnnotator, and MiFish Pipeline: Updates in 10 Years

Tao Zhu et al.

Summary: MitoFish, MitoAnnotator, and MiFish Pipeline are comprehensive databases and software for fish mitochondrial genomes, as well as a web platform for fish mitochondrial eDNA analysis. This article presents essential updates that have improved the performance and usefulness of these platforms, including enriched reference data sets, enhanced searching function, faster genome annotation and eDNA analysis with denoising of sequencing errors, and a new multisample comparative analysis function. These updates have made the platforms more intuitive, effective, and reliable. The updated platforms are freely available at .

MOLECULAR BIOLOGY AND EVOLUTION (2023)

添加到收藏夹

Article Fisheries

Complete Mitochondrial Genome and Phylogenetic Position of Chirolophis wui (Perciformes: Stichaeidae)

Yong-Suk Lee et al.

Summary: The complete mitochondrial genome of Chirolophis wui (Wang and Wang, 1935) was sequenced using the Illumina platform. The genome is 16,522 bp long with an AT content of 54%. It contains 13 protein coding genes, 22 tRNA genes, 2 rRNA genes, and 1 control region. The nucleotide composition is AT-biased with an AT skew value of -0.0556 and a GC skew value of -0.2043.

FISHES (2023)

添加到收藏夹

Article Genetics & Heredity

Complete mitochondrial genomes and phylogenetic analysis of four Baikal endemic Batrachocottus species (Scorpaeniformes: Cottoidei)

Veronika Teterina et al.

Summary: Baikal sculpins are the most diverse group of fishes in Lake Baikal, with four species from the endemic genus Batrachocottus analyzed in this study. The mitochondrial genomes of these species are similar in organization and gene arrangement to typical teleosts. Phylogenetic analysis revealed that B. baicalensis is located outside the monophyletic clades of the genus Batrachocottus, with B. multiradiatus and B. talievi being sister species.

MITOCHONDRIAL DNA PART B-RESOURCES (2022)

添加到收藏夹

Article Genetics & Heredity

Complete mitochondrial genome of scorpionfish Scorpaena neglecta (Actinopterygii)

Maheshkumar Prakash Patil et al.

Summary: This study describes the mitochondrial genome structure and gene content of Scorpaena neglecta, providing support for the study of evolution and phylogenetic relationships among Scorpaenidae species.

MITOCHONDRIAL DNA PART B-RESOURCES (2022)

添加到收藏夹

Article Genetics & Heredity

Characterization of the complete mitochondrial genome of Cottiusculus nihonkaiensis (Scorpaeniformes, Cottidae) and phylogenetic studies of Scorpaeniformes

Lele Yang et al.

Summary: The study presented the complete mitochondrial genome of Cottiusculus nihonkaiensis and discussed its mitochondrial characteristics. The genome was 16,612 bp long with a base composition of 26.4% A, 17.4% G, 31.5% C, 24.7% T. Phylogenetic analysis indicated a closest relationship between C. nihonkaiensis and Gymnocanthus species.

MITOCHONDRIAL DNA PART B-RESOURCES (2021)

添加到收藏夹

Article Genetics & Heredity

Complete mitochondrial genomes of representatives of two endemic sculpin families (Perciformes: Cottoidei) from Baikal - the world's largest and deepest lake

Nikolai Mugue et al.

Summary: This study determined five new mitogenomes of endemic Lake Baikal sculpins, providing the first mitogenome-based phylogenetic tree for all three endemic Baikal sculpin families. The phylogeny supports the monophyletic origin of the lake Baikal sculpins species flock, but does not support the monophyly of the family Cottocomephoridae (Bighead sculpins).

MITOCHONDRIAL DNA PART B-RESOURCES (2021)

添加到收藏夹

Article Fisheries

The subfamily Myoxocephalinae of cottid fishes (Cottidae): Genetic divergence and phylogenetic relationships

Olga A. Radchenko et al.

Summary: A comprehensive study based on molecular marker and karyotype analyses has confirmed the monophyly of the subfamily Myoxocephalinae, including multiple genera and identifying 13 species through karyotype analysis. Molecular genetic results showed that the subfamily can be divided into two groups corresponding to Enophrys and Myoxocephalus.

JOURNAL OF FISH BIOLOGY (2021)

添加到收藏夹

Article Biochemistry & Molecular Biology

MEGA11 Molecular Evolutionary Genetics Analysis Version 11

Koichiro Tamura et al.

Summary: MEGA software, a mature tool for computational molecular evolution, has been enhanced with new additions for building timetrees of species, pathogens, and gene families using rapid relaxed-clock methods. These additions include methods for estimating divergence times, confidence intervals, and new options for tagging sequences with spatiotemporal sampling information. The enhancements aim to improve user experience, result quality, and the pace of biological discovery.

MOLECULAR BIOLOGY AND EVOLUTION (2021)

添加到收藏夹

Article Genetics & Heredity

Complete mitochondrial genome of the plain sculpin Myoxocephalus jaok (Cottoidei: Cottidae)

Evgeniy S. Balakirev et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2020)

添加到收藏夹

Article Genetics & Heredity

Genetic Evidence for a Mixed Composition of the GenusMyoxocephalus(Cottoidei: Cottidae) Necessitates Generic Realignment

Evgeniy S. Balakirev et al.

GENES (2020)

添加到收藏夹

Article Genetics & Heredity

Complete mitochondrial genome sequence and phylogenetic analysis of Myoxocephalus scorpius (Linnaeus, 1758)

Yuan Li et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2019)

添加到收藏夹

Article Biochemistry & Molecular Biology

OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes

Stephan Greiner et al.

NUCLEIC ACIDS RESEARCH (2019)

添加到收藏夹

Article Genetics & Heredity

Complete mitochondrial genome of Gymnocanthus intermedius and Gymnocanthus herzensteini (Scorpaeniformes: Cottidae)

Chang-Ho Yi et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2019)

添加到收藏夹

Article Genetics & Heredity

Complete mitochondrial genome of the Belligerent sculpin Megalocottus platycephalus (Cottoidei: Cottidae)

Evgeniy S. Balakirev et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2019)

添加到收藏夹

Article Genetics & Heredity

The complete mitochondrial genome of the Arctic staghorn sculpin Gymnocanthus tricuspis (Scorpaeniformes: Cottidae)

Puqing Song et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2019)

添加到收藏夹

Article Genetics & Heredity

Complete mitochondrial genomes of Baikal oilfishes (Perciformes: Cottoidei), earth's deepest-swimming freshwater fishes

Michael W. Sandel et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2017)

添加到收藏夹

Article Genetics & Heredity

Complete mitochondrial genomes for Icelus spatula, Aspidophoroides olrikii and Leptoclinus maculatus: pan-Arctic marine fishes from Canadian waters

Taylor Swanburg et al.

MITOCHONDRIAL DNA PART A (2016)

添加到收藏夹

Article Biotechnology & Applied Microbiology

Structure and variation of the mitochondrial genome of fishes

Takashi P. Satoh et al.

BMC GENOMICS (2016)

添加到收藏夹

Article Biochemistry & Molecular Biology

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

Todd M. Lowe et al.

NUCLEIC ACIDS RESEARCH (2016)

添加到收藏夹

Article Genetics & Heredity

Complete mitochondrial genome of the Antlered sculpin Enophrys diceraus (Scorpaeniformes, Cottidae)

Ang Li et al.

MITOCHONDRIAL DNA (2015)

添加到收藏夹

Article Biochemical Research Methods

Informed and automated k-mer size selection for genome assembly

Rayan Chikhi et al.

BIOINFORMATICS (2014)

添加到收藏夹

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

添加到收藏夹

Article Biochemistry & Molecular Biology

Phylogenetics of the marine sculpins (Teleostei: Cottidae) of the North American Pacific Coast

Matthew L. Knope

MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)

添加到收藏夹

Article Biochemistry & Molecular Biology

MITOS: Improved de novo metazoan mitochondrial genome annotation

Matthias Bernt et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)

添加到收藏夹

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

添加到收藏夹

Article Biochemical Research Methods

ARWEN:: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences

Dean Laslett et al.

BIOINFORMATICS (2008)

添加到收藏夹

Article Biochemistry & Molecular Biology

Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences

M Miya et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2003)

添加到收藏夹

© Peeref 2019-2024. All rights reserved.